CX287805

Overview
NameCX287805
Unique NameCX287805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_YERPP (Iron-binding protein iscA OS=Yersinia pestis (strain Pestoides F) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_YERPN (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_YERPG (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_YERPE (Iron-binding protein iscA OS=Yersinia pestis GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_YERPB (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_YERPA (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_YERP3 (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_PROMH (Iron-binding protein iscA OS=Proteus mirabilis (strain HI4320) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.106e-18
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 3
Query:    3 LLERRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            L  R +   LRLGV+  GC+G++Y L +AD  +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   17 LANRGKGEGLRLGVRTSGCSGMAYVLEFADVINDEDTVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVANECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_PHOLL (Iron-binding protein iscA OS=Photorhabdus luminescens subsp. laumondii GN=iscA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.106e-18
Identity = 40/80 (50.00%), Postives = 59/80 (73.75%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L +AD  ++ D V EDKGVK+++D K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYLLEFADMINEDDTVFEDKGVKVIVDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ENTS8 (Iron-binding protein iscA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.106e-18
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + D     D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDAPQPEDTVFEDKGVKVVVDGKSLQFLNGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
The following BLAST results are available for this feature:
BLAST of CX287805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
ISCA_YERPP8.465e-1951.25Iron-binding protein iscA OS=Yersinia pestis (stra... [more]
ISCA_YERPN8.465e-1951.25Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERPG8.465e-1951.25Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERPE8.465e-1951.25Iron-binding protein iscA OS=Yersinia pestis GN=is... [more]
ISCA_YERPB8.465e-1951.25Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_YERPA8.465e-1951.25Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERP38.465e-1951.25Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_PROMH1.106e-1848.31Iron-binding protein iscA OS=Proteus mirabilis (st... [more]
ISCA_PHOLL1.106e-1850.00Iron-binding protein iscA OS=Photorhabdus luminesc... [more]
ISCA_ENTS81.106e-1851.25Iron-binding protein iscA OS=Enterobacter sakazaki... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01013E06SK Veg1 Citrus clementina cDNA clone C01013E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287805 ID=CX287805; Name=CX287805; organism=Citrus clementina; type=EST; length=485bp
AACTGTTAGAGCGGCGTCAGCGTCCTTTCCTCCGTCTTGGCGTTAAGGCT
CGCGGCTGCAACGGCTTATCCTACACCCTCAATTATGCAGACGAGAAATC
AAAGTTCGATGAGGTGGTTGAGGACAAGGGCGTTAAGATATTAATTGATC
CGAAGGCACTGATGCATGTTATAGGAACCAAGATGGATTTCGTAGATGAC
AAACTCAGATCTGAGTTTGTATTCATCAACCCCAACTCGAAAGGGCAGTG
TGGTTGTGGAGAGTCCTTTATGACAACAAGCAGTGCGGAAGCTGCTAAGC
GAGGTCGTAGTTAATGATTATCATCTTAACTTCATTTTATCTCGTGGCGA
TCTTGCATATTTCATGCTGTCCAAGCAACCTTTTGATTCCCACTTACACT
GTTACTTATGTACGTAGACTATAACATAGATCAGAATTGTGGCTTACGCT
CATGTAAATAATGGTGATAATAGTATGGTAATTCA
back to top