CX287805

Overview
NameCX287805
Unique NameCX287805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_SERP5 (Iron-binding protein iscA OS=Serratia proteamaculans (strain 568) GN=iscA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.463e-18
Identity = 40/80 (50.00%), Postives = 58/80 (72.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + D+ +  D V E+KGVK++ID K+L+++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDDMNDDDIVFENKGVKVIIDGKSLVYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_HAEIN (Iron-binding protein iscA OS=Haemophilus influenzae GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGVK  GC+GL+Y L + D  +  D+V E  GV I++DPK+L+++ G ++D+V + L   F + NPN K  CGCGESF
Sbjct:   26 LRLGVKTSGCSGLAYVLEFVDVLNSEDQVFEQYGVNIIVDPKSLVYLNGIELDYVKEGLNEGFKYNNPNVKESCGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: YUTM_BACSU (Uncharacterized protein yutM OS=Bacillus subtilis GN=yutM PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.329e-15
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 3
Query:   18 QRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSA 287
            +  FLR+GVK  GC+GLSY + +  EKS+ D V +  G+ +L+D ++L  + GT +D+    L   F   NPN+   CGCG SF T ++A
Sbjct:   25 ENAFLRVGVKGGGCSGLSYGMGFEHEKSESDSVFDQHGITVLVDKESLDIMNGTVIDYKQSMLGGGFTIDNPNAIASCGCGSSFRTATNA 114          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: HESB_PLEBO (Protein hesB OS=Plectonema boryanum GN=hesB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.199e-14
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKG-VKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAEAA 296
            +R+GV   GC+G  YTL+ A+E  K D+V+E +G VKI IDP+A   + G  +DFV+  + S F F NPN+   CGCG+SF       AA
Sbjct:   29 IRVGVSDGGCSGYQYTLDIANEP-KPDDVIEQQGRVKIYIDPQAAALINGVVVDFVEGLMDSGFKFSNPNATDTCGCGQSFQAGDCTPAA 117          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: Y1857_AQUAE (Protein aq_1857 OS=Aquifex aeolicus GN=aq_1857 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.071e-13
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 3
Query:   18 QRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            + P LR+ V   GC+G  Y + + D   + D V E  GVK++IDP ++ +V G ++D+V D +   F   NPN+ G CGCG SF
Sbjct:   30 ENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSF 113          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_RUTMC (Iron-sulfur cluster insertion protein erpA OS=Ruthia magnifica subsp. Calyptogena magnifica GN=erpA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.399e-13
Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 ERRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            E+ +   LR+ +   GC+G SY  N+ +   + D  VE+ GV++++DP +  ++IG  +D+++D   + F+  NPN+K  CGCG SF
Sbjct:   29 EKNENLHLRVYITGGGCSGFSYGFNFDETYKEGDSSVENNGVQLVVDPMSYQYLIGATVDYLEDLQGARFIIHNPNAKTTCGCGSSF 115          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_THICR (Iron-sulfur cluster insertion protein erpA OS=Thiomicrospira crunogena (strain XCL-2) GN=erpA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.386e-13
Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + + +++ D VVE  GVK++IDP +  +++G K+D+++D   + FV  NPN+   CGCG SF
Sbjct:   32 LRVYITGGGCSGFQYGFTFDESQAEDDTVVEKDGVKLMIDPMSFQYLMGAKIDYLEDLQGARFVIENPNASTTCGCGSSF 111          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_VESOH (Iron-sulfur cluster insertion protein erpA OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=erpA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.069e-13
Identity = 30/87 (34.48%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 ERRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            E+    +LR+ +   GC+G SY   + +++ + D  V + GV+++IDP +  ++IG  +D+++D   + F+  NPN+K  CGCG SF
Sbjct:   29 EQNNNLYLRVYITGGGCSGFSYGFTFDEKRKEGDSSVTNNGVQLVIDPMSYQYLIGATVDYLEDLQGARFIIHNPNAKTTCGCGSSF 115          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: Y1755_BRAJA (Uncharacterized protein blr1755 OS=Bradyrhizobium japonicum GN=blr1755 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.314e-13
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ ++A GCNG  Y +  ADE    D V++  G+K+ +D K+  H+ GT +DFV     S F F NPN+   C CG+SF
Sbjct:   26 LRVMIEAGGCNGFKYKMGIADEPKPDDTVIDCDGLKVFVDSKSREHLAGTTIDFVLAPESSGFTFHNPNAATNCSCGKSF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCAP_ARATH (Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana GN=ISCA PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 34/89 (38.20%), Postives = 56/89 (62.92%), Query Frame = 3
Query:    9 ERRQRPFLRLGVKARGCNGLSYTLNYADEKSKF--DEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            ER +   LR+GVK  GC+G+SYT+++ +  +    D  +E +G  I+ DPK+++ + G ++D+ D  +   F F NPN+   CGCG+SF
Sbjct:   88 ERGEDLCLRIGVKQGGCSGMSYTMDFENRANARPDDSTIEYQGFTIVCDPKSMLFLFGMQLDYSDALIGGGFSFSNPNATQTCGCGKSF 176          
The following BLAST results are available for this feature:
BLAST of CX287805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
ISCA_SERP52.463e-1850.00Iron-binding protein iscA OS=Serratia proteamacula... [more]
ISCA_HAEIN2.723e-1748.75Iron-binding protein iscA OS=Haemophilus influenza... [more]
YUTM_BACSU3.329e-1541.11Uncharacterized protein yutM OS=Bacillus subtilis ... [more]
HESB_PLEBO8.199e-1445.56Protein hesB OS=Plectonema boryanum GN=hesB PE=3 S... [more]
Y1857_AQUAE1.071e-1340.48Protein aq_1857 OS=Aquifex aeolicus GN=aq_1857 PE=... [more]
ERPA_RUTMC1.399e-1335.63Iron-sulfur cluster insertion protein erpA OS=Ruth... [more]
ERPA_THICR2.386e-1338.75Iron-sulfur cluster insertion protein erpA OS=Thio... [more]
ERPA_VESOH4.069e-1334.48Iron-sulfur cluster insertion protein erpA OS=Vesi... [more]
Y1755_BRAJA5.314e-1342.50Uncharacterized protein blr1755 OS=Bradyrhizobium ... [more]
ISCAP_ARATH6.941e-1338.20Iron-sulfur assembly protein IscA, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC01013E06SK Veg1 Citrus clementina cDNA clone C01013E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287805 ID=CX287805; Name=CX287805; organism=Citrus clementina; type=EST; length=485bp
AACTGTTAGAGCGGCGTCAGCGTCCTTTCCTCCGTCTTGGCGTTAAGGCT
CGCGGCTGCAACGGCTTATCCTACACCCTCAATTATGCAGACGAGAAATC
AAAGTTCGATGAGGTGGTTGAGGACAAGGGCGTTAAGATATTAATTGATC
CGAAGGCACTGATGCATGTTATAGGAACCAAGATGGATTTCGTAGATGAC
AAACTCAGATCTGAGTTTGTATTCATCAACCCCAACTCGAAAGGGCAGTG
TGGTTGTGGAGAGTCCTTTATGACAACAAGCAGTGCGGAAGCTGCTAAGC
GAGGTCGTAGTTAATGATTATCATCTTAACTTCATTTTATCTCGTGGCGA
TCTTGCATATTTCATGCTGTCCAAGCAACCTTTTGATTCCCACTTACACT
GTTACTTATGTACGTAGACTATAACATAGATCAGAATTGTGGCTTACGCT
CATGTAAATAATGGTGATAATAGTATGGTAATTCA
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