CX287805

Overview
NameCX287805
Unique NameCX287805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_SHEDO (Iron-sulfur cluster insertion protein erpA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=erpA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 3
Query:    3 LLERRQRPFLRLGVKARG--CNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LLE  Q P L+L V   G  C+G  Y   + ++ S  D V+E +GVK+++DP +L +++G ++D+      S F   NPN+   CGCG SF
Sbjct:   24 LLEEEQNPELKLRVYVTGGGCSGFQYGFTFDEKSSADDFVIEKQGVKLVVDPMSLQYLVGGEVDYTSGLEGSRFFVKNPNASSTCGCGASF 114          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: YNIU_RHOSH (Uncharacterized protein in nifU 5'region OS=Rhodobacter sphaeroides PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.065e-13
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRL V++ GC GL Y ++    ++  D VVE +G+++LIDP++  ++ G  +DFV     + FVF NPN+KG CGCG+SF
Sbjct:   26 LRLMVQSGGCAGLKYGMSLELTEAPDDLVVEAEGLRVLIDPQSGTYLNGVTIDFVTSLEGTGFVFDNPNAKGGCGCGKSF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: SUFA_ECOLI (Protein sufA OS=Escherichia coli (strain K12) GN=sufA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.065e-13
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            +RLGVK  GC G  Y L+   E  K D + E  G K+ +  +A+  + GT++DFV + L   F F NP ++ +CGCGESF
Sbjct:   41 VRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESF 120          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA2_POLNA (Putative iron-sulfur cluster insertion protein erpA 2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=erpA2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRL V   GC+G SY   + D+ ++ D ++  +GV +++D  +L +V+G ++DF D    S FV  NPN++  CGCG SF
Sbjct:   44 LRLYVTGGGCSGFSYGFAFDDQTAEDDTLIVTEGVALVVDAMSLQYVLGARVDFEDGLEGSRFVIHNPNAQSTCGCGSSF 123          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_YERPY (Iron--sulfur cluster insertion protein erpA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_YERPS (Iron-sulfur cluster insertion protein erpA OS=Yersinia pseudotuberculosis GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_YERPP (Iron-sulfur cluster insertion protein erpA OS=Yersinia pestis (strain Pestoides F) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_YERPN (Iron-sulfur cluster insertion protein erpA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_YERPG (Iron--sulfur cluster insertion protein erpA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_YERPE (Iron-sulfur cluster insertion protein erpA OS=Yersinia pestis GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
The following BLAST results are available for this feature:
BLAST of CX287805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
ERPA_SHEDO6.941e-1338.46Iron-sulfur cluster insertion protein erpA OS=Shew... [more]
YNIU_RHOSH9.065e-1345.00Uncharacterized protein in nifU 5'region OS=Rhodob... [more]
SUFA_ECOLI9.065e-1342.50Protein sufA OS=Escherichia coli (strain K12) GN=s... [more]
ERPA2_POLNA2.019e-1240.00Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_YERPY3.445e-1235.00Iron--sulfur cluster insertion protein erpA OS=Yer... [more]
ERPA_YERPS3.445e-1235.00Iron-sulfur cluster insertion protein erpA OS=Yers... [more]
ERPA_YERPP3.445e-1235.00Iron-sulfur cluster insertion protein erpA OS=Yers... [more]
ERPA_YERPN3.445e-1235.00Iron-sulfur cluster insertion protein erpA OS=Yers... [more]
ERPA_YERPG3.445e-1235.00Iron--sulfur cluster insertion protein erpA OS=Yer... [more]
ERPA_YERPE3.445e-1235.00Iron-sulfur cluster insertion protein erpA OS=Yers... [more]

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Properties
Property NameValue
Genbank descriptionC01013E06SK Veg1 Citrus clementina cDNA clone C01013E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287805 ID=CX287805; Name=CX287805; organism=Citrus clementina; type=EST; length=485bp
AACTGTTAGAGCGGCGTCAGCGTCCTTTCCTCCGTCTTGGCGTTAAGGCT
CGCGGCTGCAACGGCTTATCCTACACCCTCAATTATGCAGACGAGAAATC
AAAGTTCGATGAGGTGGTTGAGGACAAGGGCGTTAAGATATTAATTGATC
CGAAGGCACTGATGCATGTTATAGGAACCAAGATGGATTTCGTAGATGAC
AAACTCAGATCTGAGTTTGTATTCATCAACCCCAACTCGAAAGGGCAGTG
TGGTTGTGGAGAGTCCTTTATGACAACAAGCAGTGCGGAAGCTGCTAAGC
GAGGTCGTAGTTAATGATTATCATCTTAACTTCATTTTATCTCGTGGCGA
TCTTGCATATTTCATGCTGTCCAAGCAACCTTTTGATTCCCACTTACACT
GTTACTTATGTACGTAGACTATAACATAGATCAGAATTGTGGCTTACGCT
CATGTAAATAATGGTGATAATAGTATGGTAATTCA
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