CX287815

Overview
NameCX287815
Unique NameCX287815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287815 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.994e-40
Identity = 80/169 (47.34%), Postives = 112/169 (66.27%), Query Frame = 2
Query:  113 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKE 619
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E
Sbjct:   12 ELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELRE 179          
BLAST of CX287815 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.162e-39
Identity = 82/169 (48.52%), Postives = 115/169 (68.05%), Query Frame = 2
Query:  113 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKE 619
            +  + ++AS      + ++++ E S   E    +I DEL+LDGN + NLA+F  T ++ E   LM   I+KN +D DEYP T E+++RCV+I+A L+N+P E SET +G  T GSSEA ML G+A K +W+  RK +GKPFDKPNIVTG  VQ+CW KFA YF++EL+E
Sbjct:   12 KGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSP-ESSET-IGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELRE 177          
BLAST of CX287815 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.518e-39
Identity = 79/169 (46.75%), Postives = 112/169 (66.27%), Query Frame = 2
Query:  113 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKE 619
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP +KPN+V G  VQ+CW KFARY++VEL+E
Sbjct:   12 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELRE 179          
BLAST of CX287815 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.882e-38
Identity = 78/182 (42.86%), Postives = 114/182 (62.64%), Query Frame = 2
Query:   80 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKE 619
            M+  K   +  E +   F S   +  LP++ + + SI    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KLM   + KN +D  EYP TTE++NRCVN+IA L+NA   + E  +G  T+GSSEA ML G+A K  W+ + +  G   +  KPN+V  +  QVCWEKF  Y+++E++E
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWNA--SEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMRE 180          
BLAST of CX287815 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.882e-38
Identity = 78/182 (42.86%), Postives = 114/182 (62.64%), Query Frame = 2
Query:   80 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKE 619
            M+  K   +  E +   F S   +  LP++ + + SI    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KLM   + KN +D  EYP TTE++NRCVN+IA L+NA   + E  +G  T+GSSEA ML G+A K  W+ + +  G   +  KPN+V  +  QVCWEKF  Y+++E++E
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWNA--SEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMRE 180          
BLAST of CX287815 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.049e-37
Identity = 74/172 (43.02%), Postives = 109/172 (63.37%), Query Frame = 2
Query:  104 ESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKE 619
            +  +S++  +        + +F + ++    E   ++I DEL+LDGN + NLA+F  T ++     +M   I+KN +D DEYP + E++NRC++I+A L+NAP  DS   +G  T GSSEA ML GLA K  W+  RK  G P+DKPNIVTG  VQ+CW KFA YF++E++E
Sbjct:    7 DKHKSLYDNYVQSATTEEIAKFKLADDPNEPETIKKLIMDELLLDGNSKQNLATFCQTDLDKNIHSIMDKCIDKNMIDKDEYPQSAEIENRCLHILADLWNAP--DSSDTIGCSTTGSSEAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIRE 175          
BLAST of CX287815 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.499e-36
Identity = 77/180 (42.78%), Postives = 112/180 (62.22%), Query Frame = 2
Query:   98 FSESDESIHST-----FASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELK 616
            +SE+D+  H +     F S     S+P++ + +  +    AYQ++ D+LM +GN R NLA+F  T+ME E + LM   + KN +D  EYP T EL+NRCVNI+A L+NAP E S   +G  TVGSSEA ML GLA K +W+N  +  G      +PN++  +  QVCWEKF  Y++V+++
Sbjct:    3 YSENDKRKHESYRIPLFGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAPKEMS--YLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMR 180          
BLAST of CX287815 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.617e-35
Identity = 72/164 (43.90%), Postives = 104/164 (63.41%), Query Frame = 2
Query:  131 FASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELK 616
            F S     S+P++ + +  +    AYQ++ D+LM +GN R NLA+F  T+ME E + LM   + KN +D  EYP T EL+NRCVNI+A L+NAP + S   +G  TVGSSEA ML GLA K +W+N  +  G      +PN++  +  QVCWEKF  Y++V+++
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAPKDMS--YLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMR 180          
BLAST of CX287815 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 70/151 (46.36%), Postives = 101/151 (66.89%), Query Frame = 2
Query:  164 RFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELK 616
            ++++P+  +P + +YQ+I++EL LDGNP LNLASFV T+   +  KL+   + KN  D DEYP   EL  RC++++A+L++A     E  +G  T GSSEAIML GLA K++W+++ K  GK   KPNI+  +  QV  EKF RYFEVE +
Sbjct:   59 KYSVPKKGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWHA--NPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECR 207          
BLAST of CX287815 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.772e-33
Identity = 73/181 (40.33%), Postives = 110/181 (60.77%), Query Frame = 2
Query:   80 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELK 616
            M+ SK   ES   +   F S      +P++T+ +  +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KLM   + KN +D  EYP T EL+NRCVNIIA L++AP +  +  +G  T+GSSEA ML G+A K  W+ + +  G      KPN+V  +  QVCWEKF  Y++++++
Sbjct:    1 MLYSKENKES--YLEPVFGSSAEDRDIPKYTLAKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAPKD--QKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMR 177          
The following BLAST results are available for this feature:
BLAST of CX287815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEA_ECO573.994e-4047.34Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
GADA_DICDI1.162e-3948.52Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
DCEB_ECOL61.518e-3946.75Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCE_LACLM4.882e-3842.86Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA4.882e-3842.86Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
GADB_DICDI7.049e-3743.02Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCEC_LISIN3.499e-3642.78Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEC_LISMO8.617e-3543.90Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCE_YEAST1.920e-3446.36Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
DCEB_LISIN2.772e-3340.33Glutamate decarboxylase beta OS=Listeria innocua G... [more]

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Properties
Property NameValue
Genbank descriptionC01013F06SK Veg1 Citrus clementina cDNA clone C01013F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287815 ID=CX287815; Name=CX287815; organism=Citrus clementina; type=EST; length=620bp
ATTAGCTCTCTGTACTCTCTCTGACACCAAAAGAAAAAAAAAATCATTAT
TAAATTTTGTTTGTTTTAATCTTTCAATCATGGTTCTTTCAAAGACATTT
TCCGAATCCGATGAGTCAATTCACTCCACCTTTGCCTCTCGCTACGTCCG
AAACTCTCTTCCTCGGTTCACGATGCCGGAGAACTCGATACCGAAGGAGG
CGGCGTACCAGATCATAAACGACGAGCTGATGCTCGACGGGAATCCAAGA
TTGAACTTGGCTTCCTTCGTCACAACGTGGATGGAGCCTGAATGTGACAA
GCTTATGATGGCTGCCATTAACAAGAACTACGTTGACATGGATGAGTATC
CTGTCACCACCGAGCTTCAGAATCGATGTGTGAACATTATAGCCCGACTG
TTCAATGCTCCACTGGAGGACTCCGAGACGGCTGTCGGAGTTGGAACCGT
AGGATCATCGGAAGCCATAATGTTGGCCGGCCTTGCATTCAAAAGAAAGT
GGCAGAACAAGCGCAAGGCTGAAGGAAAGCCCTTTGACAAACCCAACATT
GTCACTGGAGCGAACGTTCAGGTCTGCTGGGAGAAATTTGCAAGGTATTT
TGAGGTGGAGTTGAAGGAAG
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