CX287917

Overview
NameCX287917
Unique NameCX287917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: LPH_RABIT (Lactase-phlorizin hydrolase OS=Oryctolagus cuniculus GN=LCT PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.241e-30
Identity = 66/137 (48.18%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    4 GTRIWDVFAKKPGI-VANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMTF 408
            G  IWD F   PG  V +N+TGD++ D Y++   D++++  L   AYRFS+SWSRIFP GT   +N  GV YYN+LI+ LL   I P   L+H+DLP+AL+    G  +  ++  F  YAD+CF+TFGDRVK W+TF
Sbjct:  926 GPSIWDNFTHTPGNGVTDNSTGDIACDSYNQLDADLNVLRALKVKAYRFSLSWSRIFPTGTNSSINSHGVDYYNRLIDGLLASDIFPMVTLFHWDLPQALQ-DIGGWENPSLIDLFDSYADYCFQTFGDRVKFWITF 1061          

HSP 2 Score: 119.783 bits (299), Expect = 4.393e-27
Identity = 63/136 (46.32%), Postives = 85/136 (62.50%), Query Frame = 1
Query:    4 GTRIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTG-KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMTF 408
            G  +WD F          AT +V+ D Y+++  DV ++  L    Y+FSISWSRIFP G G   + +GVAYYN+LI+ LL   I P A L+H+DLP+AL+ +  G  ++ VV  F DYA FCF  FG+RVK W+TF
Sbjct:  405 GPSVWDQFGHLKA-AQGQATPEVASDSYYKWASDVALLRGLRAQVYKFSISWSRIFPMGRGSSPSPQGVAYYNKLIDSLLDSHIEPMATLFHWDLPQALQDEG-GWQNESVVDAFVDYAAFCFSAFGNRVKLWVTF 538          

HSP 3 Score: 110.923 bits (276), Expect = 2.041e-24
Identity = 59/135 (43.70%), Postives = 80/135 (59.26%), Query Frame = 1
Query:    4 GTRIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            G  IWD F      + N+   DV+ D YH+  EDV  + NL    YRFSISWSRI P G T  +N  G+ YY +LI+ LL   I P   +YH+DLP+AL+    G  ++ +V+ F +YAD  F+  GD+VK W+T
Sbjct: 1400 GLGIWDTFTHTRLKIENDDIADVACDSYHKISEDVVALQNLAVTHYRFSISWSRILPDGTTNYINEAGLNYYVRLIDALLAANIKPQVTMYHFDLPQALQ-DVGGWENETIVQRFKEYADVLFQRLGDKVKFWIT 1533          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGL39_ARATH (Putative myrosinase 3 OS=Arabidopsis thaliana GN=TGG3 PE=5 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.457e-30
Identity = 62/138 (44.93%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    4 GTRIWDVFA----KKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            G  +WD F     +K G    N  GD +   Y  +++D+D+M  L  D YRFS++WSRI P  +   N  GV YYN LI+ LL + ITP+  L+H+DLP+ L+ +Y G L+  ++ DF DYA+ CFK FGDRVK W+T
Sbjct:   56 GLNVWDGFTHRYPEKGGPDLGN--GDSTCGSYEHWQKDIDVMTELGVDGYRFSLAWSRIAPRES---NQAGVKYYNDLIDGLLAKNITPFVTLFHWDLPQVLQDEYEGFLNHEIIDDFKDYANLCFKIFGDRVKKWIT 188          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: LCTL_HUMAN (Lactase-like protein OS=Homo sapiens GN=LCTL PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.613e-29
Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    4 GTRIWDVFAKK-PGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYG--TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMTF 408
            G  IWDVF     G V  N T DV+ D Y++ +ED+ ++  L+ + YRFS+SW R+ P G    +VN KG+ +Y+ LI+ LL   ITP   L+H+DLP+ L+ KY G  +  +   F DYA+ CF+ FGDRVK+W+TF
Sbjct:   62 GPSIWDVFTHSGKGKVLGNETADVACDGYYKVQEDIILLRELHVNHYRFSLSWPRLLPTGIRAEQVNKKGIEFYSDLIDALLSSNITPIVTLHHWDLPQLLQVKYGGWQNVSMANYFRDYANLCFEAFGDRVKHWITF 199          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGL45_ARATH (Beta-glucosidase 45 OS=Arabidopsis thaliana GN=BGLU45 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.107e-29
Identity = 61/132 (46.21%), Postives = 85/132 (64.39%), Query Frame = 1
Query:   16 WDVFA-KKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            WDVF  K PG + +    D +VDQY+R+ ED+ +M+ L  ++YRFSISW RI P G  G++N+ G+ YYN  I+ L+ RGI P+  L H D P+ LE ++   L+  + K+F   AD CFK FG+RVK W T
Sbjct:   67 WDVFTHKNPGKILDKNNADRAVDQYNRFLEDIQLMSFLGVNSYRFSISWCRILPRGRFGEINYLGIKYYNIFIDALISRGIKPFVTLNHVDYPQELEDRFQSWLNPEMQKEFGYLADICFKHFGNRVKYWTT 198          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGLS_CALSA (Beta-glucosidase A OS=Caldocellum saccharolyticum GN=bglA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.046e-28
Identity = 60/135 (44.44%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    4 GTRIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMTF 408
            G  IWD F  +   +     GDV+ D YHR++EDV +M  L   AYRFSI+W+RIFP G G VN KG+ +Y++LIN L++ GI P   LYH+DLP+ L+    G  +  +V  + DYA      + D+VK W+TF
Sbjct:   30 GESIWDRFTHQKRNILYGHNGDVACDHYHRFEEDVSLMKELGLKAYRFSIAWTRIFPDGFGTVNQKGLEFYDRLINKLVENGIEPVVTLYHWDLPQKLQ-DIGGWANPEIVNYYFDYAMLVINRYKDKVKKWITF 163          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: LCTL_MOUSE (Lactase-like protein OS=Mus musculus GN=Lctl PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.972e-27
Identity = 57/138 (41.30%), Postives = 84/138 (60.87%), Query Frame = 1
Query:    4 GTRIWDVFAK-KPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTG--KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMTF 408
            G  IWD F   +   V    T D + D Y++ +ED+ ++  L    YRFS+SW R+ P G    +VN +G+ +Y+  I+ LLK  ITP   L+H+DLP+ L+  Y G  +  + + F+DYAD CF+ FGDRVK+W+TF
Sbjct:   61 GPSIWDAFTHGRKEQVLGGDTADTACDSYYKVQEDIALLKELQVSHYRFSLSWPRLLPTGVRAEQVNKRGIKFYSDFIDALLKSNITPVVTLHHWDLPQMLQVAYGGWQNVSMTRYFSDYADLCFEVFGDRVKHWLTF 198          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGL36_ARATH (Putative myrosinase 6 OS=Arabidopsis thaliana GN=TGG6 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.343e-26
Identity = 56/133 (42.11%), Postives = 83/133 (62.41%), Query Frame = 1
Query:   16 WDVFAKK-PGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYG--TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            WD F  + P  V++ + GD++ + Y  YK+DV ++  +N  AYRFSI+WSR+ P G   G V+  G+ YYN LIN L   GI P+  ++H+D+P+   ++ I  L K    DF +YA+  F+ FGDRVK W+T
Sbjct:   51 WDYFTHRYPERVSDRSIGDLACNSYDLYKDDVKLLKRMNVQAYRFSIAWSRVLPKGRLIGGVDENGITYYNNLINELKANGIEPFVTIFHWDVPQDFRRR-IWRLLKPTYSDFKNYAELLFQRFGDRVKFWIT 182          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: GMUD_BACSU (6-phospho-beta-glucosidase gmuD OS=Bacillus subtilis GN=gmuD PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.112e-25
Identity = 55/135 (40.74%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    4 GTRIWDVFAKKPGIVANNATGDVSVDQ-YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            G  IWD + +K      +  G     Q Y  YKED+ +M  L  +++R SISWSR+ P GTG++N K   +YN +I+ L+  GI P+ NL+H+D+P AL+ K  G +++  V  + +YA  CF+ FG RVK W T
Sbjct:   34 GQNIWDYWFEKEPHRFFDHVGPADTSQFYDNYKEDIRLMKELGHNSFRMSISWSRLIPNGTGEINDKAADFYNNVIDELIANGIEPFVNLFHFDMPMALQ-KIGGWVNRETVDAYENYARTCFRLFGGRVKKWFT 167          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: LACG_CLOAB (6-phospho-beta-galactosidase OS=Clostridium acetobutylicum GN=lacG PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.546e-24
Identity = 54/135 (40.00%), Postives = 77/135 (57.04%), Query Frame = 1
Query:    4 GTRIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMTF 408
            G  IWD + KK G      TGD + D YH+YKED+        +  R SI+WSR+ P G G+VN KG+ +Y+ LI+  +K  + P+  L+H+D P  L K     L++  +  F  +A  CF+  GDRVK W+TF
Sbjct:   29 GPCIWDEYLKKEG----RFTGDTASDFYHKYKEDLKFSRKFGVNGIRISIAWSRVIPDGKGEVNPKGLKFYSDLIDECIKNNVEPFVTLHHFDTPLTLFKDG-DWLNRNNIDYFVRFAKVCFEALGDRVKKWITF 158          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: KLOT_RAT (Klotho OS=Rattus norvegicus GN=Kl PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.546e-24
Identity = 55/151 (36.42%), Postives = 80/151 (52.98%), Query Frame = 1
Query:    4 GTRIWDVFAKKPGIVANNA----------------TGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            G  IWD F   P  +  ++                TGDV+ D Y+    D + +  L    YRFSISW+R+ P GT G  N +G+ YY +L+  L + G+ P   LYH+DLP+ L+  Y G  ++ +   F DYA+ CF+ FG +VK W+T
Sbjct:   88 GASIWDTFTHHPRAIPEDSPIVMAPSGAPLPPLPSTGDVASDSYNNVYRDTEGLRELGVTHYRFSISWARVLPNGTAGTPNREGLRYYRRLLERLRELGVQPVVTLYHWDLPQRLQDTYGGWANRALADHFRDYAELCFRHFGGQVKYWIT 238          
The following BLAST results are available for this feature:
BLAST of CX287917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
LPH_RABIT7.241e-3048.18Lactase-phlorizin hydrolase OS=Oryctolagus cunicul... [more]
BGL39_ARATH9.457e-3044.93Putative myrosinase 3 OS=Arabidopsis thaliana GN=T... [more]
LCTL_HUMAN1.613e-2944.93Lactase-like protein OS=Homo sapiens GN=LCTL PE=1 ... [more]
BGL45_ARATH2.107e-2946.21Beta-glucosidase 45 OS=Arabidopsis thaliana GN=BGL... [more]
BGLS_CALSA1.046e-2844.44Beta-glucosidase A OS=Caldocellum saccharolyticum ... [more]
LCTL_MOUSE1.972e-2741.30Lactase-like protein OS=Mus musculus GN=Lctl PE=2 ... [more]
BGL36_ARATH6.343e-2642.11Putative myrosinase 6 OS=Arabidopsis thaliana GN=T... [more]
GMUD_BACSU4.112e-2540.746-phospho-beta-glucosidase gmuD OS=Bacillus subtil... [more]
LACG_CLOAB4.546e-2440.006-phospho-beta-galactosidase OS=Clostridium acetob... [more]
KLOT_RAT4.546e-2436.42Klotho OS=Rattus norvegicus GN=Kl PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01014G07SK Veg1 Citrus clementina cDNA clone C01014G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287917 ID=CX287917; Name=CX287917; organism=Citrus clementina; type=EST; length=410bp
TTCGGCACGAGGATTTGGGATGTCTTTGCTAAGAAGCCCGGAATTGTTGC
CAATAATGCCACCGGGGATGTGTCCGTGGACCAATATCACCGTTACAAAG
AGGATGTTGATATCATGGCAAATTTGAATTTTGATGCATACCGGTTCTCA
ATTTCCTGGTCCAGAATTTTCCCATATGGAACTGGGAAAGTAAATTGGAA
GGGAGTTGCATACTACAATCAGCTGATCAACTACTTGCTCAAAAGAGGTA
TTACTCCATATGCAAATCTTTATCACTATGATCTTCCTGAAGCTCTCGAG
AAGAAGTACATTGGATTGCTCAGTAAGAGAGTAGTGAAAGACTTTGCTGA
TTACGCTGACTTTTGCTTTAAGACATTTGGAGACAGAGTAAAGAATTGGA
TGACATTTAA
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