CX287917

Overview
NameCX287917
Unique NameCX287917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: LACG1_STRPN (6-phospho-beta-galactosidase 1 OS=Streptococcus pneumoniae GN=lacG1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.556e-16
Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    4 GTRIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            G  +WDV+ ++     +    D + D Y+RY+ED+ + A     A R SISW RIFP   G  N   V YY+++    LK  + P+ +L+H+D P+ + +     L++  +  F  YA FCF+ F + VK+W T
Sbjct:   34 GINMWDVYLQEN----SPFLPDPASDFYYRYEEDIALAAEHGLQALRLSISWVRIFPDIDGDANVLAVHYYHRVFQSCLKHNVIPFVSLHHFDSPQKMLETG-DWLNRENIDRFIRYARFCFQEFTE-VKHWFT 161          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGLA_ENTAG (Beta-glucosidase A OS=Enterobacter agglomerans GN=bglA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = 1
Query:    4 GTRIWDVFAKKPGIVANNATGDVSVDQYHR--YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWM 402
            G  +WD +  +  +     +G + +    R  Y +D+ +   L  ++YRFS      +P G G VN + VA+Y Q I  L   GI P   LYH+D+PE+L     G  ++  V+ F  YA+  F  F D+V  ++
Sbjct:   40 GRSVWDYYLDEKHLAGPGISGALRLTFTDRDQYLKDIQLFKELGLNSYRFSHRLDTYYPDGQGPVNLRAVAHYRQFITDLEAAGIKPLVTLYHWDMPESLSAAG-GWENRESVEWFQRYAEVIFANFSDQVDQFV 173          
The following BLAST results are available for this feature:
BLAST of CX287917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
LACG1_STRPN4.556e-1634.336-phospho-beta-galactosidase 1 OS=Streptococcus pn... [more]
BGLA_ENTAG2.117e-1331.11Beta-glucosidase A OS=Enterobacter agglomerans GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01014G07SK Veg1 Citrus clementina cDNA clone C01014G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287917 ID=CX287917; Name=CX287917; organism=Citrus clementina; type=EST; length=410bp
TTCGGCACGAGGATTTGGGATGTCTTTGCTAAGAAGCCCGGAATTGTTGC
CAATAATGCCACCGGGGATGTGTCCGTGGACCAATATCACCGTTACAAAG
AGGATGTTGATATCATGGCAAATTTGAATTTTGATGCATACCGGTTCTCA
ATTTCCTGGTCCAGAATTTTCCCATATGGAACTGGGAAAGTAAATTGGAA
GGGAGTTGCATACTACAATCAGCTGATCAACTACTTGCTCAAAAGAGGTA
TTACTCCATATGCAAATCTTTATCACTATGATCTTCCTGAAGCTCTCGAG
AAGAAGTACATTGGATTGCTCAGTAAGAGAGTAGTGAAAGACTTTGCTGA
TTACGCTGACTTTTGCTTTAAGACATTTGGAGACAGAGTAAAGAATTGGA
TGACATTTAA
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