CX287917

Overview
NameCX287917
Unique NameCX287917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGL29_ARATH (Beta-glucosidase 29 OS=Arabidopsis thaliana GN=BGLU29 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.839e-31
Identity = 63/133 (47.37%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   13 IWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK--VNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            IWD F+       N    DV+VD YHRYK+D+ ++  LN DA+RFSISW+R+ P G  K  VN +GV +Y  LI+ L+  GI P   LYH+D P+ALE +Y G L+ ++++DF ++A  CF+ FGD+VK W T
Sbjct:   62 IWDYFSHTFPERTNMQNADVAVDFYHRYKDDIKLIEELNVDAFRFSISWARLIPSGKVKDGVNKEGVQFYKALIDELIANGIQPSVTLYHWDHPQALEDEYGGFLNPQIIEDFRNFARVCFENFGDKVKMWTT 194          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGL07_ARATH (Beta-glucosidase 7 OS=Arabidopsis thaliana GN=BGLU7 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.839e-31
Identity = 55/112 (49.11%), Postives = 81/112 (72.32%), Query Frame = 1
Query:   64 GDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNW 399
            GD++ D YH+YKEDV +MA +  +++RFSISWSR+ P G G++N KG+ +Y  LI  L   GI P   LYHYDLP++LE +Y G +++++++DF  +AD CF+ FG+ VK W
Sbjct:   70 GDIACDGYHKYKEDVMLMAEMGLESFRFSISWSRLIPNGRGRINPKGLLFYKNLIKELRSHGIEPQVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLW 181          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: MYRA_SINAL (Myrosinase MA1 OS=Sinapis alba PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.014e-31
Identity = 63/140 (45.00%), Postives = 90/140 (64.29%), Query Frame = 1
Query:    4 GTRIWDVFA----KKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK--VNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            G  IWD F      K G   ++  GD + D +  +++D+D++  LN   YRFSI+WSRI P G     VN KG+ YY+ LI+ L+K+GITP+  L+H+DLP+ L+ +Y G L  +++ DF DYAD CF+ FGD VK W+T
Sbjct:   47 GLNIWDGFTHRYPNKSG--PDHGNGDTTCDSFSYWQKDIDVLDELNATGYRFSIAWSRIIPRGKRSRGVNEKGIDYYHGLISGLIKKGITPFVTLFHWDLPQTLQDEYEGFLDPQIIDDFKDYADLCFEEFGDSVKYWLT 184          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGL38_ARATH (Myrosinase 1 OS=Arabidopsis thaliana GN=TGG1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.014e-31
Identity = 64/140 (45.71%), Postives = 90/140 (64.29%), Query Frame = 1
Query:    4 GTRIWDVFA----KKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK--VNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            G  +WD F     +K G  A+   GD + D Y  +++D+D+M  LN   YRFSI+WSR+ P G     VN   + YYN LI+ L+ + +TP+  L+H+DLP+ L+ +Y G L+K +V DF DYAD CF+ FGDRVKNW+T
Sbjct:   65 GLNVWDSFTHRFPEKGG--ADLGNGDTTCDSYTLWQKDIDVMDELNSTGYRFSIAWSRLLPKGKRSRGVNPGAIKYYNGLIDGLVAKNMTPFVTLFHWDLPQTLQDEYNGFLNKTIVDDFKDYADLCFELFGDRVKNWIT 202          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGL30_ARATH (Beta-glucosidase 30 OS=Arabidopsis thaliana GN=BGLU30 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.014e-31
Identity = 65/133 (48.87%), Postives = 86/133 (64.66%), Query Frame = 1
Query:   13 IWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK--VNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            IWD F+            DV++D YHRYK+D+ +M  LN DA+RFSISWSR+ P G  K  VN +GV +Y  LI+ LL   I P   LYH+D P++LE +Y G LS ++V+DF D+A  CF+ FGD+VK W T
Sbjct:   59 IWDHFSLTYPERTKMHNADVAIDFYHRYKDDIKLMKELNMDAFRFSISWSRLIPSGKLKDGVNKEGVQFYKDLIDELLANDIQPSMTLYHWDHPQSLEDEYGGFLSPKIVEDFRDFARICFEEFGDKVKMWTT 191          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGL28_ARATH (Beta-glucosidase 28 OS=Arabidopsis thaliana GN=BGLU28 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.014e-31
Identity = 64/133 (48.12%), Postives = 87/133 (65.41%), Query Frame = 1
Query:   13 IWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK--VNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            IWD F+            DV+VD YHRYK+D+ +M  LN DA+RFSISW+R+ P G  K  VN +GV +Y  LI+ L+  GI P   LYH+D P++LE +Y G LS ++V+DF D++  CF+ FGD+VK W T
Sbjct:   62 IWDYFSHTFPERTRMQNADVAVDFYHRYKDDIKLMKELNMDAFRFSISWARLIPSGKVKDGVNKEGVEFYKALIDELVANGIEPSMTLYHWDHPQSLEDEYGGFLSPQIVEDFRDFSRVCFEEFGDKVKMWTT 194          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGLB_MICBI (Thermostable beta-glucosidase B OS=Microbispora bispora GN=bglB PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.117e-30
Identity = 63/134 (47.01%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    4 GTRIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            G  +WDVF+  PG VA+  TGD++ D YHRY +DV +MA L    YRFS++W RI P G+G VN  G+ +Y++L++ LL  GITPY  LYH+DLP+ LE +  G  ++     FA+YA    +  GDRV+ W+T
Sbjct:   61 GRGLWDVFSHTPGKVASGHTGDIACDHYHRYADDVRLMAGLGDRVYRFSVAWPRIVPDGSGPVNPAGLDFYDRLVDELLGHGITPYPTLYHWDLPQTLEDRG-GWAARDTAYRFAEYALAVHRRLGDRVRCWIT 193          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: GBA3_CAVPO (Cytosolic beta-glucosidase OS=Cavia porcellus GN=Gba3 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.489e-30
Identity = 66/136 (48.53%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    4 GTRIWDVFAKKPGI-VANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            G  +WD F  + G  V  N TGDV+   Y  ++ED+  +  L    YRFSISWSR+ P GT G +N KGV YYN++I+ LL  G+TP   LYH+DLP+ALE +  G LS+ +++ F  YA FCF TFG+RV+ W+T
Sbjct:   28 GPCVWDTFTHQGGERVFKNQTGDVACGSYTLWEEDLKCIKQLGLTHYRFSISWSRLLPDGTTGFINQKGVDYYNKIIDDLLTNGVTPVVTLYHFDLPQALEDQG-GWLSEAIIEVFDKYAQFCFSTFGNRVRQWIT 162          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGL37_ARATH (Myrosinase 2 OS=Arabidopsis thaliana GN=TGG2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.250e-30
Identity = 61/140 (43.57%), Postives = 89/140 (63.57%), Query Frame = 1
Query:    4 GTRIWDVFA----KKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK--VNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            G  +WD F     +K G  A+   GD + D Y  +++D+D+M  L    YRFS +WSRI P G     +N  G+ YY+ LI+ L+ R ITP+  L+H+DLP++L+ +Y G L + ++ DF DYAD CF+ FGDRVK+W+T
Sbjct:   77 GLNVWDGFTHRYPEKGG--ADLGNGDTTCDSYRTWQKDLDVMEELGVKGYRFSFAWSRILPKGKRSRGINEDGINYYSGLIDGLIARNITPFVTLFHWDLPQSLQDEYEGFLDRTIIDDFKDYADLCFERFGDRVKHWIT 214          
BLAST of CX287917 vs. ExPASy Swiss-Prot
Match: BGL01_ARATH (Beta-glucosidase 1 OS=Arabidopsis thaliana GN=BGLU1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.250e-30
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 1
Query:   13 IWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYIGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 405
            +WD F            GD++ D YH+YKEDV +MA      +RFSISWSR+   G G +N KG+ +Y   I  L+K GI P+  L+HYD P+ LE  Y G  +++++KDF  YAD CF+ FG+ VK W T
Sbjct:   62 VWDTFLH----CRKMDNGDIACDGYHKYKEDVQLMAETGLHTFRFSISWSRLISNGRGSINPKGLQFYKNFIQELVKHGIEPHVTLHHYDFPQYLEDDYGGWTNRKIIKDFTAYADVCFREFGNHVKFWTT 188          
The following BLAST results are available for this feature:
BLAST of CX287917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
BGL29_ARATH3.839e-3147.37Beta-glucosidase 29 OS=Arabidopsis thaliana GN=BGL... [more]
BGL07_ARATH3.839e-3149.11Beta-glucosidase 7 OS=Arabidopsis thaliana GN=BGLU... [more]
MYRA_SINAL5.014e-3145.00Myrosinase MA1 OS=Sinapis alba PE=1 SV=2[more]
BGL38_ARATH5.014e-3145.71Myrosinase 1 OS=Arabidopsis thaliana GN=TGG1 PE=1 ... [more]
BGL30_ARATH5.014e-3148.87Beta-glucosidase 30 OS=Arabidopsis thaliana GN=BGL... [more]
BGL28_ARATH5.014e-3148.12Beta-glucosidase 28 OS=Arabidopsis thaliana GN=BGL... [more]
BGLB_MICBI1.117e-3047.01Thermostable beta-glucosidase B OS=Microbispora bi... [more]
GBA3_CAVPO2.489e-3048.53Cytosolic beta-glucosidase OS=Cavia porcellus GN=G... [more]
BGL37_ARATH3.250e-3043.57Myrosinase 2 OS=Arabidopsis thaliana GN=TGG2 PE=1 ... [more]
BGL01_ARATH3.250e-3044.27Beta-glucosidase 1 OS=Arabidopsis thaliana GN=BGLU... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01014G07SK Veg1 Citrus clementina cDNA clone C01014G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287917 ID=CX287917; Name=CX287917; organism=Citrus clementina; type=EST; length=410bp
TTCGGCACGAGGATTTGGGATGTCTTTGCTAAGAAGCCCGGAATTGTTGC
CAATAATGCCACCGGGGATGTGTCCGTGGACCAATATCACCGTTACAAAG
AGGATGTTGATATCATGGCAAATTTGAATTTTGATGCATACCGGTTCTCA
ATTTCCTGGTCCAGAATTTTCCCATATGGAACTGGGAAAGTAAATTGGAA
GGGAGTTGCATACTACAATCAGCTGATCAACTACTTGCTCAAAAGAGGTA
TTACTCCATATGCAAATCTTTATCACTATGATCTTCCTGAAGCTCTCGAG
AAGAAGTACATTGGATTGCTCAGTAAGAGAGTAGTGAAAGACTTTGCTGA
TTACGCTGACTTTTGCTTTAAGACATTTGGAGACAGAGTAAAGAATTGGA
TGACATTTAA
back to top