CX287919

Overview
NameCX287919
Unique NameCX287919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.688e-11
Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = 2 
Query:  191 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWT 394
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWT
Sbjct:   44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWT 117
[Close]
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.688e-11
Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = 2 
Query:  191 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWT 394
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWT
Sbjct:   34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWT 107
[Close]
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.688e-11
Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = 2 
Query:  191 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWT 394
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWT
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWT 116
[Close]
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = 2 
Query:  191 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWT 394
            M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWT
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWT 116
The following BLAST results are available for this feature:
BLAST of CX287919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS5_ACEAT5.688e-1143.24Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS2_ACEAT5.688e-1143.24Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_ACEAT5.688e-1143.24Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_ACEAT9.703e-1143.24Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionC01014G09SK Veg1 Citrus clementina cDNA clone C01014G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287919 ID=CX287919; Name=CX287919; organism=Citrus clementina; type=EST; length=394bp
GGAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGACCACCGTTGCCA
CCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACC
GGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGA
CATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGT
GGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCA
CTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGG
CTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTG
AGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACA
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