CX287919

Overview
NameCX287919
Unique NameCX287919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.385e-49
Identity = 92/127 (72.44%), Postives = 108/127 (85.04%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASS++SS  VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWT
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWT 125          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.809e-49
Identity = 93/127 (73.23%), Postives = 105/127 (82.68%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASSM+SS  V T    S AQA+MVAPFTGLKSS++FP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L+D  L KE+ YLLR+ WIPC+EFELE G+VYREH ++PGYYDGRYWT
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWT 123          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.362e-49
Identity = 96/127 (75.59%), Postives = 102/127 (80.31%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASSMISS  V T NRA    A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYRE+H SPGYYDGRYWT
Sbjct:    1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWT 123          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.362e-49
Identity = 91/127 (71.65%), Postives = 110/127 (86.61%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASS++SS  VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWT
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWT 125          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.362e-49
Identity = 91/127 (71.65%), Postives = 110/127 (86.61%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASS++SS  VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWT
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWT 125          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.085e-49
Identity = 90/125 (72.00%), Postives = 104/125 (83.20%), Query Frame = 2
Query:   20 SSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFELEKG+VYREH+ SPGYYDGRYWT
Sbjct:    2 ASMISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWT 125          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.085e-49
Identity = 93/127 (73.23%), Postives = 106/127 (83.46%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASS+ISS  VAT  R ++AQASMVAPF GLKS+ +FP + K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YLL  GW+PCLEFE E G+VYRE+H+SP YYDGRYWT
Sbjct:    1 MASSVISSAAVAT--RTNVAQASMVAPFNGLKSAVSFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWT 125          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.030e-49
Identity = 96/127 (75.59%), Postives = 102/127 (80.31%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASSMISS  V T NRA    A MVAPFTGLKS +  P T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYREH+ S GYYDGRYWT
Sbjct:    1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGLP-TRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWT 123          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.030e-49
Identity = 90/125 (72.00%), Postives = 104/125 (83.20%), Query Frame = 2
Query:   20 SSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFELEKG+VYREH+ SPGYYDGRYWT
Sbjct:    2 ASMISSSAVTTVSRASRGQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWT 125          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.263e-49
Identity = 89/127 (70.08%), Postives = 106/127 (83.46%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASS++S+     A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWT
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWT 126          
The following BLAST results are available for this feature:
BLAST of CX287919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS3A_SOLLC1.385e-4972.44Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS1B_ARATH1.809e-4973.23Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS_GLYTO2.362e-4975.59Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSC_SOLTU2.362e-4971.65Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSA_SOLTU2.362e-4971.65Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS3_PEA3.085e-4972.00Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS1_PETHY3.085e-4973.23Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS4_SOYBN4.030e-4975.59Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_PEA4.030e-4972.00Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS3_MESCR5.263e-4970.08Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionC01014G09SK Veg1 Citrus clementina cDNA clone C01014G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287919 ID=CX287919; Name=CX287919; organism=Citrus clementina; type=EST; length=394bp
GGAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGACCACCGTTGCCA
CCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACC
GGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGA
CATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGT
GGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCA
CTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGG
CTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTG
AGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACA
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