CX287919

Overview
NameCX287919
Unique NameCX287919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.977e-49
Identity = 91/127 (71.65%), Postives = 106/127 (83.46%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASS++S+ TVAT   A+ AQASM+A F GLKS+++FP T+K + DITSIASNGGRV+CM VWPP   KK+ETLSYLP LSDE LLKEI YLL+ GW+PCLEFE E G+VYREHH SPGYYDGRYWT
Sbjct:    1 MASSVMSTATVATG--ANAAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWT 125          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.172e-48
Identity = 90/128 (70.31%), Postives = 109/128 (85.16%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQA-SMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASS+ISS  VAT  R ++ QA SM+APFTGLKS++ FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWT
Sbjct:    1 MASSVISSAAVAT--RTNVTQAGSMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWT 126          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.531e-48
Identity = 89/124 (71.77%), Postives = 105/124 (84.68%), Query Frame = 2
Query:   23 SMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            ++ISS  V T NRA + QA++  PFTGLKSS+ FP TKK NNDITSI SNG RV CM+VWPP G KKFETLSYLPPL+DE LLKE+ YLLR GW+PC+EFELEKG+V+R+++SSPGYYDGRYWT
Sbjct:    2 ALISSAAVTTINRAPV-QANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWT 123          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.531e-48
Identity = 89/127 (70.08%), Postives = 109/127 (85.83%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASS++SS  VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWT
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWT 125          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.531e-48
Identity = 89/127 (70.08%), Postives = 109/127 (85.83%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASS++SS  VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWT
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWT 125          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.411e-48
Identity = 90/127 (70.87%), Postives = 106/127 (83.46%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASS++S+     A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWT
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWT 125          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.411e-48
Identity = 92/127 (72.44%), Postives = 105/127 (82.68%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MAS M   +  A   R + AQASMVAPFTGLKS SAFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWT
Sbjct:    1 MASMM---SNAAVVGRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWT 123          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 9.925e-48
Identity = 88/127 (69.29%), Postives = 107/127 (84.25%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASS++SS  VAT +R   AQASMVAPFTGLKS+  FPATKK N+DITS+ASNGGRVQCMKVWP   +K++ETLSYLPPL+ + L +++ YLL + W+PCLEFE + G+VYREHH+SPGYYDGRYWT
Sbjct:    1 MASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWT 125          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 9.925e-48
Identity = 87/127 (68.50%), Postives = 102/127 (80.31%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASSM+S+  +AT    + AQASMVAPF GLKS + FP TKK++ND +S+ SNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YLL  GWIPC+EFELE  +VYRE+H SPGY DGRYWT
Sbjct:    1 MASSMLSNAAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWT 127          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.772e-47
Identity = 89/127 (70.08%), Postives = 106/127 (83.46%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASSM++ST  A   RA  AQ+SMVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+H+SPGYYDGRYWT
Sbjct:    1 MASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWT 124          
The following BLAST results are available for this feature:
BLAST of CX287919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS_CAPAN8.977e-4971.65Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLTU1.172e-4870.31Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TRIRP1.531e-4871.77Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_TOBAC1.531e-4870.08Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_NICSY1.531e-4870.08Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_MESCR3.411e-4870.87Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS2_MESCR3.411e-4872.44Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_SPIOL9.925e-4869.29Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_AMAHP9.925e-4868.50Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_LEMGI3.772e-4770.08Ribulose bisphosphate carboxylase small chain SSU5... [more]

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Properties
Property NameValue
Genbank descriptionC01014G09SK Veg1 Citrus clementina cDNA clone C01014G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287919 ID=CX287919; Name=CX287919; organism=Citrus clementina; type=EST; length=394bp
GGAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGACCACCGTTGCCA
CCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACC
GGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGA
CATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGT
GGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCA
CTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGG
CTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTG
AGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACA
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