CX287919

Overview
NameCX287919
Unique NameCX287919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.771e-42
Identity = 78/114 (68.42%), Postives = 95/114 (83.33%), Query Frame = 2
Query:   53 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            A  A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ TLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWT
Sbjct:    6 ATVAAVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWT 118          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.138e-42
Identity = 77/114 (67.54%), Postives = 94/114 (82.46%), Query Frame = 2
Query:   53 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            A  A++ Q +MVAPFTGLK+++AFP TKK N   +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+ SSPGYYDGRYWT
Sbjct:    6 ATVAAVPQTNMVAPFTGLKANAAFPVTKKVNG-FSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWT 118          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 5.275e-41
Identity = 78/123 (63.41%), Postives = 97/123 (78.86%), Query Frame = 2
Query:   26 MISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            M+S+  VA   R   AQ +MV  F G +SS AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+++SPGYYDGRYWT
Sbjct:    2 MVSTAAVA---RVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWT 120          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.299e-39
Identity = 80/127 (62.99%), Postives = 100/127 (78.74%), Query Frame = 2
Query:   14 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            MASSM+ ST  A  +R S AQ++MV PF GL SS+AFP T+K   D + + SNG RV+CM+VWPP G KKFETLSYLPPL+ E L +E+ YL+R+GWIPC+EF  + G+VYRE+H+SPGYYDGRYWT
Sbjct:    1 MASSMMVST--AAVSRTSPAQSNMVVPFAGLHSSAAFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWT 123          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.912e-36
Identity = 66/108 (61.11%), Postives = 89/108 (82.41%), Query Frame = 2
Query:   71 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            + A+ VAPF GLKS++  P ++++N    S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF  + G+++REH++SPGYYDGRYWT
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWT 113          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.673e-36
Identity = 67/108 (62.04%), Postives = 87/108 (80.56%), Query Frame = 2
Query:   71 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            + A+ VAPF GLKS++  P + ++ +   S  SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF  + G+V+REH+SSPGYYDGRYWT
Sbjct:    8 SSATTVAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWT 114          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.138e-35
Identity = 66/108 (61.11%), Postives = 88/108 (81.48%), Query Frame = 2
Query:   71 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            + A+ VAPF GLKS++  P ++++   + S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EAL K++ YL+RS W+PCLEF  + G+V+REH+SSPGYYDGRYWT
Sbjct:    8 SSATTVAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWT 113          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.138e-35
Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 2
Query:   71 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            + A+ VAPF GLKS++  P  +++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWT
Sbjct:    8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWT 114          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.138e-35
Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 2
Query:   71 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            + A+ VAPF GLKS++  P  +++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWT
Sbjct:    8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWT 114          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.487e-35
Identity = 64/108 (59.26%), Postives = 85/108 (78.70%), Query Frame = 2
Query:   71 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            + A+ VAPF GLKS++  P ++++N       SNGGR++CM+VWP  G+KKFETLSYLPPLS E LLK++ YL+RS W+PCLEF  + G+++REH+ SPGYYDGRYWT
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWT 114          
The following BLAST results are available for this feature:
BLAST of CX287919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS6_FLAPR4.771e-4268.42Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_FLATR8.138e-4267.54Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_LEMGI5.275e-4163.41Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_ZANAE1.299e-3962.99Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HORVU3.912e-3661.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT6.673e-3662.04Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS1_WHEAT1.138e-3561.11Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS1_ORYSJ1.138e-3562.04Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI1.138e-3562.04Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_AEGTA1.487e-3559.26Ribulose bisphosphate carboxylase small chain, chl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01014G09SK Veg1 Citrus clementina cDNA clone C01014G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287919 ID=CX287919; Name=CX287919; organism=Citrus clementina; type=EST; length=394bp
GGAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGACCACCGTTGCCA
CCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACC
GGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGA
CATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGT
GGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCA
CTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGG
CTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTG
AGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACA
back to top