CX287919

Overview
NameCX287919
Unique NameCX287919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.487e-35
Identity = 67/108 (62.04%), Postives = 85/108 (78.70%), Query Frame = 2
Query:   71 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            + A+ VAPF GLKS++  P ++++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWT
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWT 114          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.391e-33
Identity = 64/108 (59.26%), Postives = 87/108 (80.56%), Query Frame = 2
Query:   71 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            + A+ VAPF GLKS+++ P  ++++  + ++ SNGGR++CM+VWP  G KKFETLSYLPPLS + LLK++ YLLR+GWIPCLEF  + G+VYRE+ +SP YYDGRYWT
Sbjct:    9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWT 114          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.287e-33
Identity = 62/108 (57.41%), Postives = 83/108 (76.85%), Query Frame = 2
Query:   71 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            + A+  APF GLKS+++ P  +++   +  + SNGGR++CM+VWP  G KKFETLSYLPPL+ E LLK++ YLLR+ W+PCLEF  E G+VYRE+ +SP YYDGRYWT
Sbjct:    8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWT 113          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.846e-32
Identity = 65/117 (55.56%), Postives = 86/117 (73.50%), Query Frame = 2
Query:   53 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYW 391
            A  A    A++V+ FTGLKS++ FP++ K +N          SNGGRV+CM+VWPP G  KFETLSYLP L++E L+KE+ YLLR+ W+PCLEF+LE G + R+++ SPGYYDGRYW
Sbjct:    2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYW 117          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.971e-32
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 2
Query:  155 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFEL KG+VY EH+ SP YYDGRYWT
Sbjct:    2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWT 81          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.146e-30
Identity = 69/134 (51.49%), Postives = 95/134 (70.90%), Query Frame = 2
Query:   14 MASSMIS-STTVATANRASLAQ---ASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYW 391
            MASS+++ S+T A A  A+ ++   +++V+ FTGLKS + FP++K  +N          SNG RV+CM+VWPP   KKFETLSYLP L+ E L+KE+ YLL++ W+PCLEFE E G + R + +SPGYYDGRYW
Sbjct:    1 MASSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYW 133          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.670e-26
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  191 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            M+VWPP GLKKFETLSYLPPL+ E LL E++YLL  GWIP LEFE++ G+VYREH  SPGYYDGRYWT
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWT 68          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.921e-25
Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 2
Query:   20 SSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            +S+++S  V T   AS A  +  +    +++          +   T   +NG RV CM+VW P    KFETLSYLPPLS +AL K+I Y+++SGW PC+EF+++ G V RE  + PGYYDGRYWT
Sbjct:    2 ASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWT 125          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  236 SYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWT 394
            +YLPPLS EALLK++ YL+RS W+PCLEF  + G+++REH++SPGYYDGRYWT
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWT 52          
BLAST of CX287919 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 52/127 (40.94%), Postives = 63/127 (49.61%), Query Frame = 2
Query:   32 SSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWT 394
            SS + A A  A     S V P   LK     PA K       + A+       M VW P   K FET SYLPPLSDE +  ++ Y++ +GWIPCLEF E +K +V  E     G     YYD RYWT
Sbjct:    8 SSVSAAVARPAR----SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWT 119          
The following BLAST results are available for this feature:
BLAST of CX287919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS2_ORYSJ1.487e-3562.04Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS_MAIZE1.391e-3359.26Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY5.287e-3357.41Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH5.846e-3255.56Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA9.971e-3273.75Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA7.146e-3051.49Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL3.670e-2675.00Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_MARPA6.921e-2544.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT1.826e-1767.92Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_CHLRE1.108e-1440.94Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionC01014G09SK Veg1 Citrus clementina cDNA clone C01014G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287919 ID=CX287919; Name=CX287919; organism=Citrus clementina; type=EST; length=394bp
GGAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGACCACCGTTGCCA
CCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACC
GGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGA
CATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGT
GGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCA
CTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGG
CTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTG
AGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACA
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