CX287945

Overview
NameCX287945
Unique NameCX287945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287945 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.363e-54
Identity = 104/217 (47.93%), Postives = 152/217 (70.05%), Query Frame = 1
Query:   16 FAQYLVPAMRNIQNAINGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFA-IAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKR--GSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINFN 657
            ++Q+L+ AM N+ NA+  +GL ++IKV+TA  +G L  ++PP    F+ ++   ++P+I+FL +N  PLL N+YPYF  I+    + L YALF    T     S  Y++LFDAILD++Y A+EK GG +++I++SESGWP+ G   A   ++NA+TY  NLI HVKR  G+PKKPG+ IETY+FAMFDEN K G   E+H+GLF+P ++ +YQ+NFN
Sbjct:  133 YSQFLLHAMENVYNALAASGLQDKIKVTTATYSGLLANTYPPKASIFRGEFNSFINPIIQFLAQNNLPLLANVYPYFVHISNTADVPLSYALF----TQRGKNSAGYQNLFDAILDSMYFAVEKAGGPNVEIIVSESGWPSEGNSAA--TIENAQTYYRNLIDHVKRGAGTPKKPGKSIETYLFAMFDENVKKGEITEKHFGLFSPDQRAKYQLNFN 343          
BLAST of CX287945 vs. ExPASy Swiss-Prot
Match: E13I_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-N (Fragment) OS=Nicotiana tabacum GN=PRN PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.363e-54
Identity = 103/217 (47.47%), Postives = 150/217 (69.12%), Query Frame = 1
Query:   16 FAQYLVPAMRNIQNAINGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFA-IAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVK--RGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINFN 657
            +A ++ PAM+N+ NA+  AGL +QIKVSTA  +G L  ++PP    F+ ++   ++P+I+FL ++  PLL N+YPYF  I     + L YALF  Q+         Y++LFDA+LD++Y A+EK GG +++I++SESGWP+ G   A   ++NA+TY  NLI HVK   G+PKKPG+ IETY+FAMFDEN K G   E+H+GLF+P ++ +YQ+NFN
Sbjct:   65 YAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGEFNSFINPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQQEA----NPAGYQNLFDALLDSMYFAVEKAGGQNVEIIVSESGWPSEGNSAA--TIENAQTYYENLINHVKSGAGTPKKPGKAIETYLFAMFDENNKEGDITEKHFGLFSPDQRAKYQLNFN 275          
BLAST of CX287945 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.363e-54
Identity = 103/217 (47.47%), Postives = 150/217 (69.12%), Query Frame = 1
Query:   16 FAQYLVPAMRNIQNAINGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFA-IAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVK--RGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINFN 657
            +A ++ PAM+N+ NA+  AGL +QIKVSTA  +G L  ++PP    F+ ++   ++P+I+FL ++  PLL N+YPYF  I     + L YALF  Q+         Y++LFDA+LD++Y A+EK GG +++I++SESGWP+ G   A   ++NA+TY  NLI HVK   G+PKKPG+ IETY+FAMFDEN K G   E+H+GLF+P ++ +YQ+NFN
Sbjct:  133 YAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGEFNSFINPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQQEA----NPAGYQNLFDALLDSMYFAVEKAGGQNVEIIVSESGWPSEGNSAA--TIENAQTYYENLINHVKSGAGTPKKPGKAIETYLFAMFDENNKEGDITEKHFGLFSPDQRAKYQLNFN 343          
BLAST of CX287945 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.363e-54
Identity = 103/216 (47.69%), Postives = 148/216 (68.52%), Query Frame = 1
Query:   16 FAQYLVPAMRNIQNAINGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFA-IAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVK--RGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINF 654
            ++Q+L+ AM N+ NA+  AGL ++IKV+TA  +G L  ++PP    F+++++  ++P+I FL  N  PLL N+YPYF  I     + L YALF  Q T     S  Y++LFDA+LD++Y A+EK GG +++I++SESGWP+ G   A   ++NA+TY  NL+ HVK   G+PKKPGR +ETY+FAMFDEN K G   E+H+GLF P R  +YQ+NF
Sbjct:  137 YSQFLLHAMENVYNALAAAGLQDKIKVTTATYSGLLANTYPPKDSIFREEFKSFINPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALFNQQGT----NSTGYQNLFDALLDSIYFAVEKAGGPNVEIIVSESGWPSEGNSAA--TIENAQTYYRNLVNHVKGGAGTPKKPGRIVETYLFAMFDENEKNGEVTEKHFGLFYPNRTAKYQLNF 346          
BLAST of CX287945 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.154e-53
Identity = 105/216 (48.61%), Postives = 148/216 (68.52%), Query Frame = 1
Query:   16 FAQYLVPAMRNIQNAINGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVK--RGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINFN 657
            +A+++ PAM NI NA++ AGL NQIKVSTA   G L  ++PP    F+ +Y+  ++P+I FL+ +  PLL N+YPYF  A +  + L YALF+ Q          Y++LFDA++D++Y A EK GG +++I++SESGWP+ G   A   ++NA TY  NLI HVK   G+PKKPGR IETY+FAMFDEN K G   E+H+GLF P ++P+YQ+ F+
Sbjct:  128 YARFVGPAMENIYNALSSAGLQNQIKVSTATYLGLLTNTYPPRDSIFRDEYKSFINPIIGFLSRHNLPLLANIYPYFGHADD-NVPLPYALFKQQGL----NDAGYQNLFDALVDSMYFATEKLGGQNIEIIVSESGWPSEGHPSA--TLENAMTYYTNLINHVKGGAGTPKKPGRTIETYLFAMFDENRKDGKPSEQHFGLFKPDQRPKYQLKFD 336          
BLAST of CX287945 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.194e-50
Identity = 118/221 (53.39%), Postives = 147/221 (66.52%), Query Frame = 1
Query:   19 AQYLVPAMRNIQNAINGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIAGNRQISLDYALFR---SQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHV-KRGSPKKPGRPIETYIFAMFDENGK-TGP--EIERHWGLFAP-TRQPRYQINFN 657
            A  L+ AM+NI  A++ AGL N IKVST    G    ++PPSRG FK +YR  L P+I FL   RSPLLVN+Y YF    NR +SL +AL +   + +    +  L Y + FDA LD+VYAALEK+GGGSLD+V+SESGWPT GG GA  +V NA  Y NNL  HV K GSPK+    IETYIFAMFDE  + T P  E E++WG+F+P TRQ +Y + FN
Sbjct:  127 AAALIQAMQNIDRALSAAGLSN-IKVSTTTFMGPSRNTYPPSRGRFKDEYRNFLQPVIGFLVNKRSPLLVNIYTYFGYM-NRDVSLQFALLQPNSNNEFTDPNNQLRYLNFFDANLDSVYAALEKSGGGSLDVVVSESGWPTQGGPGA--SVPNAEAYVNNLRLHVNKNGSPKRQ-EAIETYIFAMFDEAPRQTSPNDEYEKYWGMFSPTTRQLKYGVKFN 342          
BLAST of CX287945 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.037e-50
Identity = 106/209 (50.72%), Postives = 143/209 (68.42%), Query Frame = 1
Query:   37 AMRNIQNAINGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIAGNR--QISLDYALFRSQQTVVSDGS-LSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINF 654
            AM+N+ NA+  A L + IKVSTA+    +  SFPPS G F+      L P+ RFL+   +P L N+YPYFA   +R   I L+YA  +   TV  +G+ L+Y SLFDA++D++YAALEK G  ++ +V+SESGWP+AGG GA  +V+NAR YN  LI H++ G+PK+PG  IETYIFAMF+EN K G E+ER++GLF P +QP Y   F
Sbjct:  111 AMQNVHNALASANLSSSIKVSTAVRFDVITNSFPPSSGVFRDPSG--LVPIARFLDSTGAPFLANVYPYFAYRDDRGQNIRLNYATLQPGTTVRDNGNGLTYTSLFDAMVDSIYAALEKAGTPNVRVVVSESGWPSAGGFGA--SVENARNYNQGLIDHIRSGTPKRPG-AIETYIFAMFNENRKPGDEVERNFGLFFPNKQPVYPTTF 314          
BLAST of CX287945 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.539e-50
Identity = 111/217 (51.15%), Postives = 141/217 (64.98%), Query Frame = 1
Query:   13 GFAQYLVPAMRNIQNAINGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIAGN-RQISLDYALFRSQQTVVSDGS--LSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINF 654
            G AQ ++ AMRN+  A+  A LG  IKVSTA+    +  SFPPS   F Q Y   +  + R L    +PLL N+YPYFA +GN R I L+YA F+   T V D    L Y +LF+A++DA+YAALEK G  S+ +V+SESGWP+AGG  A    +NAR YN  LI HV  G+PKKPG  +E Y+FAMF+EN K G E ERH+GLF P ++P Y INF
Sbjct:   99 GAAQSILAAMRNLNKALAAARLGG-IKVSTAVRFDVITNSFPPSSAVFAQPY---MVDIARHLASTNAPLLANVYPYFAYSGNPRDIKLNYATFQPGATPVRDAGNGLIYTNLFNAMVDAMYAALEKAGAPSVRVVVSESGWPSAGGFAA--TPENARAYNQGLIDHVAHGTPKKPGH-MEAYVFAMFNENQKPGLETERHFGLFYPNKRPVYHINF 308          
BLAST of CX287945 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.842e-49
Identity = 112/216 (51.85%), Postives = 140/216 (64.81%), Query Frame = 1
Query:   13 GFAQYLVPAMRNIQNAINGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIAGNR-QISLDYALFRSQQTVVSDGS-LSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINF 654
            G  Q ++PAMRN+  A++ AGLG  IKVST+I    +  SFPPS G FK  Y   +  + R L    +PLL N+YPYFA   N   ISL+YA F+   TV    + L+Y SLFDA++DAVYAALEK G  ++ +V+SESGWP+AGG  A  +  NARTYN  LI HV  G+PKK    +ETYIFAMF+EN KTG   ER +GLF P + P Y I F
Sbjct:  126 GATQSILPAMRNLNAALSAAGLG-AIKVSTSIRFDEVANSFPPSAGVFKNAY---MTDVARLLASTGAPLLANVYPYFAYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGWPSAGGFAA--SAGNARTYNQGLINHVGGGTPKK-REALETYIFAMFNENQKTGDATERSFGLFNPDKSPAYNIQF 334          
BLAST of CX287945 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.554e-49
Identity = 105/217 (48.39%), Postives = 140/217 (64.52%), Query Frame = 1
Query:    7 ARGFAQYLVPAMRNIQNAINGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIAGNRQ-ISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINF 654
            A G  + LVPAM+N+  A+  AGLG+ IKV+T++    LG   PPS GSF  +    + P+++FL    +PL+ N+YPY A A N   + + YALF +  TVV DG+  Y++LFD  +DA Y A+ K GG S+ +V+SESGWP+ GG  A     NAR YN +LI HV RG+P+ PG  IETYIFAMF+EN K    +E++WGLF P  Q  Y INF
Sbjct:  101 AGGATRNLVPAMKNVHGALVAAGLGH-IKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPSGGGTAA--TPANARFYNQHLINHVGRGTPRHPG-AIETYIFAMFNENQKDS-GVEQNWGLFYPNMQHVYPINF 312          
The following BLAST results are available for this feature:
BLAST of CX287945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E13L_TOBAC1.363e-5447.93Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13I_TOBAC1.363e-5447.47Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13G_TOBAC1.363e-5447.47Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13C_TOBAC1.363e-5447.69Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13A_SOLLC1.154e-5348.61Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E13B_BRACM1.194e-5053.39Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E13E_HORVU2.037e-5050.72Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
E13D_HORVU4.539e-5051.15Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13B_HORVU3.842e-4951.85Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
GUB2_HORVU6.554e-4948.39Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC01015B03SK Veg1 Citrus clementina cDNA clone C01015B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287945 ID=CX287945; Name=CX287945; organism=Citrus clementina; type=EST; length=738bp
AATTCGGCACGAGGCTTCGCTCAGTACCTTGTTCCCGCCATGAGAAACAT
ACAAAACGCCATCAACGGAGCCGGCCTTGGAAACCAAATCAAGGTTTCCA
CTGCCATCGAAACTGGAGCTCTTGGCGAATCTTTCCCTCCGTCAAGAGGC
TCATTTAAACAAGATTACAGACCCATTCTTGATCCCCTCATTCGCTTCCT
CAACGAAAACAGATCCCCCTTGCTTGTCAACCTGTACCCTTACTTCGCAA
TTGCTGGTAACCGCCAAATATCTCTGGATTATGCACTTTTTAGGTCACAA
CAGACGGTCGTTTCCGACGGATCGTTAAGTTACCGAAGTCTTTTTGACGC
CATCTTGGATGCTGTTTACGCCGCGCTGGAGAAAACCGGCGGGGGGTCGC
TGGACATCGTGATATCAGAGAGTGGGTGGCCGACGGCTGGTGGTGACGGA
GCGTTGACGAATGTTGATAATGCAAGGACTTATAATAATAACTTGATACA
ACATGTGAAGCGAGGGTCACCAAAGAAGCCTGGAAGGCCTATTGAGACTT
ACATATTTGCTATGTTTGATGAGAATGGCAAAACGGGACCTGAGATTGAG
AGGCATTGGGGACTTTTTGCTCCAACTAGGCAGCCTAGATACCAGATTAA
TTTTAATTAATTAACTAAGCTAAAGCAGCTGCATGCACCAACAGGATCCC
GACGGATATTTATACTGGGATAAATTCTACCATATGTA
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