CX287959

Overview
NameCX287959
Unique NameCX287959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DHH1_GIBZE (ATP-dependent RNA helicase DHH1 OS=Gibberella zeae GN=DHH1 PE=3 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.014e-90
Identity = 157/192 (81.77%), Postives = 175/192 (91.15%), Query Frame = 2 
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP++VKDF DK +  PY INLMDELTL+GITQYYAFVEE+QKVHCLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HAKM Q  RNRVFHDFRNG CRNLVC+DL TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSGR+GHLGLA+NLI ++DRFNLY IE++LGTEI+ IP  ID+++Y
Sbjct:  223 ATFPLSVKDFSDKNMVSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIERDLGTEIQPIPASIDKSLY 414
[Close]
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DDX6_MOUSE (Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus GN=Ddx6 PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.630e-90
Identity = 156/192 (81.25%), Postives = 178/192 (92.71%), Query Frame = 2 
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP++V+ F + +LQKPY INLM+ELTLKG+TQYYA+V ERQKVHCLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CRNLVCTDLFTRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLITY+DRFNL  IE++LGTEIK IP +ID+++Y
Sbjct:  278 ATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLY 469
[Close]
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DDX6_HUMAN (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 2.630e-90
Identity = 156/192 (81.25%), Postives = 178/192 (92.71%), Query Frame = 2 
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP++V+ F + +LQKPY INLM+ELTLKG+TQYYA+V ERQKVHCLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CRNLVCTDLFTRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLITY+DRFNL  IE++LGTEIK IP +ID+++Y
Sbjct:  278 ATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLY 469
[Close]
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.630e-90
Identity = 156/192 (81.25%), Postives = 178/192 (92.71%), Query Frame = 2 
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP++V+ F + +LQKPY INLM+ELTLKG+TQYYA+V ERQKVHCLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CRNLVCTDLFTRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLITY+DRFNL  IE++LGTEIK IP +ID+++Y
Sbjct:  278 ATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLY 469
[Close]
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.860e-90
Identity = 157/192 (81.77%), Postives = 175/192 (91.15%), Query Frame = 2 
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP+TVKDF DK +  PY INLMDELTL+GITQ+YAFVEE++KVHCLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+M+Q +RNRVFHDFRNG CRNLVC+DL TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI++EDRFNLY IE+ELGTEI  IP  I + +Y
Sbjct:  228 ATFPMTVKDFSDKNMADPYEINLMDELTLRGITQFYAFVEEKEKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMIQANRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLISWEDRFNLYNIERELGTEIAPIPQIIPKNLY 419
[Close]
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DDX6_XENTR (Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis GN=ddx6 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 7.653e-90
Identity = 156/192 (81.25%), Postives = 176/192 (91.67%), Query Frame = 2 
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP++V+ F   +LQKPY INLM+ELTLKG+TQYYA+V ERQKVHCLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CRNLVCTDLFTRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLITY+DRFNL  IE++LGTEIK IP  ID+++Y
Sbjct:  277 ATFPLSVQKFMTSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDKSLY 468
[Close]
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.305e-89
Identity = 154/192 (80.21%), Postives = 174/192 (90.62%), Query Frame = 2 
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP+TVK F D+ L KPY INLMDELTL+GITQYYAFV+E+QK+HCLNTLFSKL INQSIIFCNS  RVELLA+KITELGYSC+Y HAKM+Q HRNRVFH+FRNG CRNLVC+DL TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGHLG+A+NLI + DR+NLY+IEQELGTEIK IP  ID+ +Y
Sbjct:  209 ATFPLTVKAFMDRNLHKPYEINLMDELTLRGITQYYAFVDEKQKLHCLNTLFSKLDINQSIIFCNSTVRVELLARKITELGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLINWNDRYNLYKIEQELGTEIKPIPAQIDKNLY 400
[Close]
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.705e-89
Identity = 155/192 (80.73%), Postives = 177/192 (92.19%), Query Frame = 2 
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP++V+ F + +LQKPY INLM+ELTLKG+TQYYA+V ERQKVHCLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CRNLVCTDLFTRGIDIQAVNVVINFDFPK +ETYLHR+G SGRFGHLGLA+NLITY+DRFNL  IE++LGTEIK IP +ID+++Y
Sbjct:  278 ATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGGSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLY 469
[Close]
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DDX6_XENLA (ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 2.908e-89
Identity = 156/192 (81.25%), Postives = 175/192 (91.15%), Query Frame = 2 
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP++V+ F   +LQKPY INLM+ELTLKG+TQYYA+V ERQKVHCLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CRNLVCTDLFTRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLITY+DRFNL  IE++LGTEIK IP  ID+ +Y
Sbjct:  277 ATFPLSVQKFMTLHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDKNLY 468
[Close]
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DDX6_CAVPO (Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.798e-89
Identity = 154/192 (80.21%), Postives = 176/192 (91.67%), Query Frame = 2 
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP++V+ F + +LQKPY INLM+ELTLKG+TQYYA+V ERQKVHCLNTLF +LQ NQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CRNLVCTDLFTRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLITY+DRFNL  IE++LGTEIK IP +ID+++Y
Sbjct:  267 ATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFPRLQTNQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLY 458
The following BLAST results are available for this feature:
BLAST of CX287959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_GIBZE2.014e-9081.77ATP-dependent RNA helicase DHH1 OS=Gibberella zeae... [more]
DDX6_MOUSE2.630e-9081.25Probable ATP-dependent RNA helicase DDX6 OS=Mus mu... [more]
DDX6_HUMAN2.630e-9081.25Probable ATP-dependent RNA helicase DDX6 OS=Homo s... [more]
DDX6_CHICK2.630e-9081.25Probable ATP-dependent RNA helicase DDX6 OS=Gallus... [more]
DHH1_BOTFB5.860e-9081.77ATP-dependent RNA helicase dhh1 OS=Botryotinia fuc... [more]
DDX6_XENTR7.653e-9081.25Probable ATP-dependent RNA helicase ddx6 OS=Xenopu... [more]
DHH1_YARLI1.305e-8980.21ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
DDX6_PONAB1.705e-8980.73Probable ATP-dependent RNA helicase DDX6 OS=Pongo ... [more]
DDX6_XENLA2.908e-8981.25ATP-dependent RNA helicase ddx6 OS=Xenopus laevis ... [more]
DDX6_CAVPO3.798e-8980.21Probable ATP-dependent RNA helicase DDX6 (Fragment... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01015C05SK Veg1 Citrus clementina cDNA clone C01015C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287959 ID=CX287959; Name=CX287959; organism=Citrus clementina; type=EST; length=740bp
AGCTACTTTCCCTGTTACCGTCAAGGACTTTAAAGATAAATACCTACAAA
AACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAATTACC
CAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTGCCTCAACAC
ACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAATTCGG
TGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGTACTCT
TGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGAGTATT
TCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGACCTAT
TTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACTTTGAT
TTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCTGGAAG
GTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGACCGCT
TCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGCAGATA
CCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCCGGTAT
CTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGTTGATT
CAAGGCACTTGGCTCTGCAGCTGAGGAAGCATTTTATGAACTGGTTATGT
GTGTTGGTGGAAGACTTGCAGCTGGTGCTGTGCGATTACC
back to top