CX287959

Overview
NameCX287959
Unique NameCX287959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.282e-36
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPY-VINLMDELTLKGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 562
            AT P  V +   K++  P  ++   DELTL+GI Q+Y  VE+   K  CL  L+  + + Q++IFCN+ ++VE L  K+    ++   IHA + Q  R+ + ++FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T +D   +  IE+   T+I+++P  I
Sbjct:  204 ATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEQEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIEKFYSTQIEEMPADI 392          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.187e-36
Identity = 76/193 (39.38%), Postives = 122/193 (63.21%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPY-VINLMDELTLKGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 574
            AT P  V +   K+++ P  ++   DELTL+GI Q+Y  VE+ + K+  L  L+  + + Q++IFCN+  +V+ L +++TE  ++   +H  M Q  R+ + H+FR G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+++N +T +D   +  IEQ   T I+++P +I   I
Sbjct:  200 ATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: IF4A_NEUCR (ATP-dependent RNA helicase eIF4A OS=Neurospora crassa GN=tif-1 PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.187e-36
Identity = 76/193 (39.38%), Postives = 123/193 (63.73%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPY-VINLMDELTLKGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 574
            AT P  V +   K++++P  ++   DELTL+GI Q+Y  VE+ + K+  L+ L+  + I Q++IFCN+  +V+ L  K+T   ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T +D   +  IEQ   T+I+++P ++   I
Sbjct:  205 ATMPQDVLEVTTKFMREPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 397          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.187e-36
Identity = 77/191 (40.31%), Postives = 120/191 (62.83%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPYVINLM-DELTLKGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 568
            AT    + +   K++  P  I +  DE++L  I QYY  VE+ + K   L  L+  L I Q +IFCN+  +V+ L++K+T+  +S   +H  M Q+ R++V +DFR+G  R L+ TD++ RGID+Q +++VIN+D P N E Y+HR+GRSGRFG  G+A+N IT E+R  L  IE     +IK  P ++++
Sbjct:  206 ATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTPANLEE 396          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.856e-36
Identity = 81/193 (41.97%), Postives = 120/193 (62.18%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            AT P  V +   K+++ P  I +  E LTL+GI QY+  VEE  K+  L  L+  + I QS+IF N+  +V+ LA+++ +  ++   +H++M +  R +V   FRNG+ R LV TDL  RGID+  VN+VINFD P N E+YLHR+GR GR+G  G+A+N +T +D   L  IE    T+I ++P  +D A Y
Sbjct:  211 ATMPDDVLELTKKFMRDPTRILVKRESLTLEGIKQYFIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWLAQQLNQSNHTVSCMHSEMPKQDREKVMSTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYLHRIGRGGRYGRKGVAINFVTQKDVEVLREIESHYHTQIDELP--VDFAAY 401          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: IF4A_MAGGR (ATP-dependent RNA helicase eIF4A OS=Magnaporthe grisea GN=TIF1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.730e-36
Identity = 76/193 (39.38%), Postives = 122/193 (63.21%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPY-VINLMDELTLKGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 574
            AT P  V +   K+++ P  ++   DELTL+GI Q+Y  VE+ + K+  L+ L+  + I Q++IFCN+  +V+ L  K+T   ++   +H  M Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T +D   +  IEQ   T+I+++P ++   I
Sbjct:  204 ATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 396          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.730e-36
Identity = 79/189 (41.80%), Postives = 117/189 (61.90%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPY-VINLMDELTLKGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 562
            AT P  V D   K++  P  V+   DELTL+GI QY+  VE+ + K   L  L+  L I Q++IFCN+  +V+ L  K+ E  ++   +H +M Q  R+ +  DFR G  R L+ TD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T +D   L  IE    T+I ++P ++
Sbjct:  206 ATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.730e-36
Identity = 79/189 (41.80%), Postives = 117/189 (61.90%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPY-VINLMDELTLKGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 562
            AT P  V D   K++  P  V+   DELTL+GI QY+  VE+ + K   L  L+  L I Q++IFCN+  +V+ L  K+ E  ++   +H +M Q  R+ +  DFR G  R L+ TD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T +D   L  IE    T+I ++P ++
Sbjct:  206 ATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: FAL1_ASPTN (ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fal1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.730e-36
Identity = 79/189 (41.80%), Postives = 117/189 (61.90%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPY-VINLMDELTLKGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 562
            AT P  V D   K++  P  V+   DELTL+GI QY+  VE+ + K   L  L+  L I Q++IFCN+  +V+ L  K+ E  ++   +H +M Q  R+ +  DFR G  R L+ TD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T +D   L  IE    T+I ++P ++
Sbjct:  206 ATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: FAL1_ASPOR (ATP-dependent RNA helicase fal1 OS=Aspergillus oryzae GN=fal1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.730e-36
Identity = 79/189 (41.80%), Postives = 117/189 (61.90%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPY-VINLMDELTLKGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 562
            AT P  V D   K++  P  V+   DELTL+GI QY+  VE+ + K   L  L+  L I Q++IFCN+  +V+ L  K+ E  ++   +H +M Q  R+ +  DFR G  R L+ TD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T +D   L  IE    T+I ++P ++
Sbjct:  205 ATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNV 393          
The following BLAST results are available for this feature:
BLAST of CX287959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_DEBHA1.282e-3640.21ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
IF4A_SCHPO2.187e-3639.38ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
IF4A_NEUCR2.187e-3639.38ATP-dependent RNA helicase eIF4A OS=Neurospora cra... [more]
FAL1_KLULA2.187e-3640.31ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]
IF4A_TRYCR2.856e-3641.97Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A_MAGGR3.730e-3639.38ATP-dependent RNA helicase eIF4A OS=Magnaporthe gr... [more]
FAL1_NEOFI3.730e-3641.80ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
FAL1_EMENI3.730e-3641.80ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
FAL1_ASPTN3.730e-3641.80ATP-dependent RNA helicase fal1 OS=Aspergillus ter... [more]
FAL1_ASPOR3.730e-3641.80ATP-dependent RNA helicase fal1 OS=Aspergillus ory... [more]

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Properties
Property NameValue
Genbank descriptionC01015C05SK Veg1 Citrus clementina cDNA clone C01015C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287959 ID=CX287959; Name=CX287959; organism=Citrus clementina; type=EST; length=740bp
AGCTACTTTCCCTGTTACCGTCAAGGACTTTAAAGATAAATACCTACAAA
AACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAATTACC
CAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTGCCTCAACAC
ACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAATTCGG
TGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGTACTCT
TGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGAGTATT
TCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGACCTAT
TTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACTTTGAT
TTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCTGGAAG
GTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGACCGCT
TCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGCAGATA
CCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCCGGTAT
CTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGTTGATT
CAAGGCACTTGGCTCTGCAGCTGAGGAAGCATTTTATGAACTGGTTATGT
GTGTTGGTGGAAGACTTGCAGCTGGTGCTGTGCGATTACC
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