CX287998

Overview
NameCX287998
Unique NameCX287998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287998 vs. ExPASy Swiss-Prot
Match: MA1B1_HUMAN (Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Homo sapiens GN=MAN1B1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.893e-29
Identity = 86/222 (38.74%), Postives = 118/222 (53.15%), Query Frame = 1
Query:   19 QLELIALSQRTGDPKYRQRAEKVIVELNK-TFPADGLLPIYISPDRGTPSY-STITFGAMGDSFYEYLLKVWIQGNK--TSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFF-------RDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYK 651
            QLE   LS+ TGD K+++  EKV   ++  +   DGL+P++I+   G  ++    T GA  DS+YEYLLK WIQG K  T  ++ Y +  E     LL   R S PS  T++ E        KMD L CF PG +ALG     P      + LA+EL  TCY   +   T L+ E   F       R   ++      N+LRPETVESLFYL+R+TG++ Y+
Sbjct:  402 QLEFRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQETQLLEDYVEAIEGVRTHLL---RHSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASH---MELAQELMETCYQMNRQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQ 617          
BLAST of CX287998 vs. ExPASy Swiss-Prot
Match: YKU1_SCHPO (Putative mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Schizosaccharomyces pombe GN=SPAC2E1P5.01c PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.031e-28
Identity = 92/240 (38.33%), Postives = 128/240 (53.33%), Query Frame = 1
Query:    1 ADSGTEQLELIALSQRTGDPKYRQRAEKVIVEL--NKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLS-LVRRSTPSSFTYICEKNGD---SLIDKMDELACFAPGMIALG------------SSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTS-----WNILRPETVESLFYLWRLTGNKTYK 651
            A+SGT Q+EL  LS  TGDPKY   A+K +  L  + T+   GL+PI ++   G      I  G+ GDS+YEYLLK  +Q   +  V  YR  ++ S+ G++  L+  +TP+ F YI E  G    + + KMD L CF PG +  G            S  +G    E+ + LA+EL  TCY  Y  T T LA E  FF   Q  +   S      N++RPETVESLF L+R+T ++ Y+
Sbjct:  196 AESGTVQMELRYLSYLTGDPKYWITADKTMEVLLGDATWSHTGLVPITVNLITGAYVGRNIRLGSHGDSYYEYLLKQDLQLFSSGTV--YRKAFDLSVDGIIEYLLNYTTPNHFAYIAELPGGLEHAQLPKMDHLVCFLPGTLMWGATNGTSLEAARTSKNWGTRQ-ERDVKLAQELMRTCYEMYNMTATGLAPEIVFFDVDQTKNEIYSKRRDQHNLMRPETVESLFILYRITRDEIYR 432          
BLAST of CX287998 vs. ExPASy Swiss-Prot
Match: MA1A2_MOUSE (Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB OS=Mus musculus GN=Man1a2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.346e-28
Identity = 77/221 (34.84%), Postives = 113/221 (51.13%), Query Frame = 1
Query:    1 ADSGTEQLELIALSQRTGDPKYRQRAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGT----SWNILRPETVESLFYLWRLTGNKTYK 651
            A+ GT  +E + LS  TGD  Y  +   +   L K    +GL P Y++P  G       + G +GDSFYEYLLK W+  +KT      R M++ +++ +   + + +     +I E     L  KM  LACFA GM ALG+ G     +  +L L  E+A TC+  Y  T  KL  E++ F DG   +V       + ILRPE +E+ +YLWR T +  Y+
Sbjct:  334 AEFGTLHMEFVHLSYLTGDLTYYNKVMHIRKLLQKMERPNGLYPNYLNPRTGRWGQYHTSVGGLGDSFYEYLLKAWLMSDKTD--HEARRMYDDAVEAIEKHLIKKSRGGLVFIGEWKNGHLERKMGHLACFAGGMFALGADGSRKDKAGHYLELGAEIARTCHESYDRTALKLGPESFKF-DGAVEAVAVRQAEKYYILRPEVIETYWYLWRFTHDPRYR 551          
BLAST of CX287998 vs. ExPASy Swiss-Prot
Match: MNS1_YEAST (Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Saccharomyces cerevisiae GN=MNS1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.053e-25
Identity = 91/252 (36.11%), Postives = 129/252 (51.19%), Query Frame = 1
Query:    1 ADSGTEQLELIALSQRTGDPKYRQRAEKVIVELNKTFPA----DGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLS-LVRRSTPSSFTYICEKN---GDSLIDKMDELACFAPGMIALGSS-GYGPGDSEK----FLSLAEELAW--------TCYNFYQSTPTKLAGENYFFRDG---QD----MSVGTSW-------NILRPETVESLFYLWRLTGNKTYK 651
            A+  T Q+E   L+  TG+  Y +  E+V   L K        DGL+PIY  PD G    STI FG+ GDSFYEYLLK ++  ++T     Y D++  SM+G+   L+ +S PSS  YI E+       L  KMD L CF  G++A GS+ G    ++ +     LSL  +  W        TCY  Y+ + + LA E   F DG   QD     SVG  +       N+ RPETVES+ +++ L+ +  Y+
Sbjct:  206 AEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSRGDSFYEYLLKQYLLTHETL----YYDLYRKSMEGMKKHLLAQSKPSSLWYIGEREQGLHGQLSPKMDHLVCFMGGLLASGSTEGLSIHEARRRPFFSLSLERKSDWDLAKGITDTCYQMYKQSSSGLAPEIVVFNDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYR 453          
BLAST of CX287998 vs. ExPASy Swiss-Prot
Match: MAN12_PENCI (Mannosyl-oligosaccharide alpha-1,2-mannosidase OS=Penicillium citrinum GN=MSDC PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14
Identity = 62/236 (26.27%), Postives = 106/236 (44.92%), Query Frame = 1
Query:    1 ADSGTEQLELIALSQRTGDPKYRQRAEKVIVELNKTFPAD-----GLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPS--SFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYF------------FRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYK 651
            A +GT  LE   LS  TGD +Y + ++K    L K  P+      GL+   I+ + G  + S +++    DSFYEYL+K+++   K    + Y+D W  + +  +  ++    S    T++   +  +       L CF  G   LG +     D + F+    EL   C   Y ST TK+  +++             F +     + +   +LRPE +ES +Y  R+TG + Y+
Sbjct:  197 AVTGTLVLEWTRLSDLTGDEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIKMYVYDPKR--FETYKDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNYDLSSQHLTCFDGGSFLLGGTVL---DRQDFIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYR 427          
The following BLAST results are available for this feature:
BLAST of CX287998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
MA1B1_HUMAN7.893e-2938.74Endoplasmic reticulum mannosyl-oligosaccharide 1,2... [more]
YKU1_SCHPO1.031e-2838.33Putative mannosyl-oligosaccharide 1,2-alpha-mannos... [more]
MA1A2_MOUSE1.346e-2834.84Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB ... [more]
MNS1_YEAST4.053e-2536.11Endoplasmic reticulum mannosyl-oligosaccharide 1,2... [more]
MAN12_PENCI4.204e-1426.27Mannosyl-oligosaccharide alpha-1,2-mannosidase OS=... [more]

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Properties
Property NameValue
Genbank descriptionC01015F10SK Veg1 Citrus clementina cDNA clone C01015F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287998 ID=CX287998; Name=CX287998; organism=Citrus clementina; type=EST; length=653bp
GCAGATTCTGGTACAGAACAACTAGAATTGATTGCTCTTTCACAAAGGAC
GGGTGACCCAAAGTATCGGCAGAGGGCTGAGAAAGTAATAGTGGAGCTTA
ATAAAACATTCCCTGCTGATGGCCTGCTTCCCATCTATATTAGTCCTGAC
AGGGGAACTCCATCATACTCGACCATAACCTTTGGTGCCATGGGTGATAG
CTTTTATGAATATTTACTCAAAGTTTGGATTCAAGGGAATAAAACTTCAG
CAGTGAAGCCTTATAGGGACATGTGGGAGACATCAATGAAAGGTCTATTA
AGCTTGGTTAGGAGATCAACACCATCGTCTTTTACATACATTTGTGAGAA
GAATGGGGACTCGCTGATAGACAAGATGGATGAATTAGCATGCTTCGCTC
CTGGAATGATTGCTTTAGGATCTTCTGGTTATGGACCCGGTGACTCTGAG
AAATTTCTCTCTCTTGCAGAAGAGCTTGCTTGGACATGTTATAACTTCTA
CCAGTCAACACCGACAAAATTGGCTGGAGAGAATTACTTCTTTCGTGATG
GGCAGGACATGTCTGTGGGCACATCATGGAACATACTGAGACCTGAGACT
GTTGAATCACTTTTTTACTTGTGGCGTCTAACTGGCAACAAGACATACAA
AGA
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