CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRT2 (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpiA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.138e-23
Identity = 67/143 (46.85%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVDP+LN +KG GGALL EK+V   +K ++ V DESK+V  LG  KL  PVEVVQ    +   RL   F   G +   R  E G  ++TD  N+IIDL     I + V+ G E+  + GVVEHGLF  M   VI+AGK GV++
Sbjct:   86 EVDPQLNGIKGGGGALLMEKIVATPTKKYIWVVDESKMVDQLGAFKL--PVEVVQ----YGADRLYLDFESKGYKPSFRVTEQGDRFVTDMKNFIIDLDL-GKINNPVALGDELKAMTGVVEHGLFNGMVNKVIVAGKDGVKI 221          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRT1 (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpiA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.138e-23
Identity = 67/143 (46.85%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVDP+LN +KG GGALL EK+V   +K ++ V DESK+V  LG  KL  PVEVVQ    +   RL   F   G +   R  E G  ++TD  N+IIDL     I + V+ G E+  + GVVEHGLF  M   VI+AGK GV++
Sbjct:   86 EVDPQLNGIKGGGGALLMEKIVATPTKKYIWVVDESKMVDQLGAFKL--PVEVVQ----YGADRLYLDFESKGYKPSFRVTEQGDRFVTDMKNFIIDLDL-GKINNPVALGDELKAMTGVVEHGLFNGMVNKVIVAGKDGVKI 221          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPS (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain BisB5) GN=rpiA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.058e-23
Identity = 61/143 (42.66%), Postives = 88/143 (61.54%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653
            EVD  L L+KG GGALLREK+V AAS   +V+ADESK V  LG  K  +PVEV+ F        ++  F ++G   + KLR+GE G  ++TD  ++I+D +    I D       + ++ GVVEHGLF+ +A+ V++AG  G+
Sbjct:   87 EVDTRLELIKGGGGALLREKIVAAASDRMIVIADESKWVDCLG--KFPLPVEVIPFGLAATRRAIEKAFTQVGAAGQLKLRDGEAGHAFVTDGGHWIVDAHLGR-IPDAPRLAKLLSEIPGVVEHGLFIGIASTVVLAGTEGI 226          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHIEC (Ribose-5-phosphate isomerase A OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpiA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 65/142 (45.77%), Postives = 88/142 (61.97%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            EVDP L L+KG GGALLREK+V AAS+  +V+ADESKLV  LG    A+P+EV  F      + ++ +   LG   E  LR+  +G+ + TD  ++IID  F   I D  +  +E+  + GVVEHGLF++MA   IIAG  G
Sbjct:   87 EVDPALRLIKGGGGALLREKIVAAASQRMIVIADESKLVETLGA--FALPIEVNPFGLVSTRIAIEKVAARLGLSGELNLRQSGDGE-FTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMAALAIIAGPAG 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHILW (Ribose-5-phosphate isomerase A OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpiA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 65/142 (45.77%), Postives = 88/142 (61.97%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            EVDP L L+KG GGALLREK+V AAS+  +V+ADESKLV  LG    A+P+EV  F      + ++ +   LG   E  LR+  +G+ + TD  ++IID  F   I D  +  +E+  + GVVEHGLF++MA   IIAG  G
Sbjct:   87 EVDPALRLIKGGGGALLREKIVAAASERMIVIADESKLVDTLGA--YALPIEVNPFGLVSTRIAIEKVAARLGLAGELSLRQSGDGE-FTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMAALAIIAGPAG 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHIE6 (Ribose-5-phosphate isomerase A OS=Rhizobium etli (strain CIAT 652) GN=rpiA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 65/142 (45.77%), Postives = 88/142 (61.97%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            EVDP L L+KG GGALLREK+V AAS+  +V+ADESKLV  LG    A+P+EV  F      + ++ +   LG   E  LR+  +G+ + TD  ++IID  F   I D  +  +E+  + GVVEHGLF++MA   IIAG  G
Sbjct:   87 EVDPALRLIKGGGGALLREKIVAAASERMIVIADESKLVDTLGA--YALPIEVNPFGLVSTRIAIEKVAARLGLSGELSLRQSGDGE-FTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMAALAIIAGPAG 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRA3 (Ribose-5-phosphate isomerase A OS=Streptococcus agalactiae serotype III GN=rpiA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 68/146 (46.58%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVDP+ N +KG GGALL EK+V   +K ++ V DESKLV  LG  KL  PVEVV    ++   RL  +F+  G     RE E G  +ITD  NYIIDL  +  I+D      E+    GVVEHGLF  M   VI+AGK G+++  K
Sbjct:   86 EVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKL--PVEVV----RYGSERLFRVFKSKGYCPSFRETE-GDRFITDMGNYIIDLDLK-KIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK 223          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_NITHX (Ribose-5-phosphate isomerase A OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpiA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 57/145 (39.31%), Postives = 89/145 (61.38%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKL--REGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            E+DP+LNL+KG GGALLREK+V AAS+  +V+ADE+K V+GLG  +  +P+EV+ F        + + F + G   ++  R+G +G  ++TD  ++I D +    I D       +  + GVVEHGLF+ +A   ++AG  G+ V
Sbjct:   87 EIDPDLNLIKGGGGALLREKIVAAASERMIVIADETKWVAGLG--RFPLPIEVIPFGLAATRRAIAEAFTKAGASGQMVVRKGPDGLAFVTDGGHWIFDAHL-GQIPDASHLAGLLNPIPGVVEHGLFIGLARVAMLAGAQGIRV 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BACAN (Ribose-5-phosphate isomerase A OS=Bacillus anthracis GN=rpiA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 57/142 (40.14%), Postives = 85/142 (59.86%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            E+D  L L+KG GGALLREK+V ++SK  +++ DESK+V+ LG     +P+E++ F WK    + +   + LGC+  LR  +N + +ITDN N IID  F   I         +  + GVVE GLF++M +  II  K G++
Sbjct:   84 EIDSNLQLIKGGGGALLREKIVASSSKELIIIVDESKVVTRLG--TFPLPIEIIPFAWK----QTESKIQSLGCQTTLRL-KNNETFITDNNNMIIDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGIQ 218          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRA5 (Ribose-5-phosphate isomerase A OS=Streptococcus agalactiae serotype V GN=rpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 68/146 (46.58%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVDP+ N +KG GGALL EK+V   +K ++ V DESKLV  LG  KL  PVEVV    ++   RL  +F+  G     RE E G  +ITD  NYIIDL  +  I+D      E+    GVVEHGLF  M   VI+AGK G+++  K
Sbjct:   86 EVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKL--PVEVV----RYGSERLFRVFKSKGYCPSFRETE-GDRFITDMGNYIIDLDLK-KIEDPKQLANELDHTVGVVEHGLFNGMVNKVIVAGKNGLDILEK 223          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_STRT24.138e-2346.85Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]
RPIA_STRT14.138e-2346.85Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]
RPIA_RHOPS7.058e-2342.66Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_RHIEC1.204e-2245.77Ribose-5-phosphate isomerase A OS=Rhizobium etli (... [more]
RPIA_RHILW1.572e-2245.77Ribose-5-phosphate isomerase A OS=Rhizobium legumi... [more]
RPIA_RHIE61.572e-2245.77Ribose-5-phosphate isomerase A OS=Rhizobium etli (... [more]
RPIA_STRA32.054e-2246.58Ribose-5-phosphate isomerase A OS=Streptococcus ag... [more]
RPIA_NITHX2.054e-2239.31Ribose-5-phosphate isomerase A OS=Nitrobacter hamb... [more]
RPIA_BACAN2.054e-2240.14Ribose-5-phosphate isomerase A OS=Bacillus anthrac... [more]
RPIA_STRA52.682e-2246.58Ribose-5-phosphate isomerase A OS=Streptococcus ag... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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