CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRPF (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 63/143 (44.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    +   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   86 EVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVTV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRPD (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 63/143 (44.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    +   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   86 EVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVTV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRP8 (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M18 GN=rpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 63/143 (44.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    +   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   86 EVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVTV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRP6 (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M6 GN=rpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 63/143 (44.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    +   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   86 EVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVTV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_LACGA (Ribose-5-phosphate isomerase A OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 62/140 (44.29%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  234 VDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFE-TPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            VD  L+ +KG GGAL  EK V   SK  + + DESKLV  L G    +PVEV+    + N  R    F E G + + R  +NGK Y+T   NYIIDL  + TP+  G++    +    GVVEHGLFLDM   VIIA   G
Sbjct:   93 VDDNLDGIKGGGGALTLEKNVAINSKKVIWIVDESKLVHHLSG--FPLPVEVLPVSAEQNFKR----FEEEGLKPQWRLDDNGKRYVTHYGNYIIDLAADPTPVPHGLA--DYLDHTVGVVEHGLFLDMCDEVIIAHSDG 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_THICR (Ribose-5-phosphate isomerase A OS=Thiomicrospira crunogena (strain XCL-2) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 58/143 (40.56%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 656
            E DP+LNL+KG GGAL REK+V A +K FV +AD+SK V+ LG  K  +P+EV+     +     +++ +  G E  LREG     + TDN N I+D++    I D V+  TE+  + GVV +GLF      + + G   GVE
Sbjct:   85 EADPKLNLIKGGGGALTREKIVLAVAKQFVCIADDSKKVAVLG--KFPLPIEVIPMARSY---VAREVVKRFGGEPVLREG-----FTTDNGNVILDIH-GLEITDPVAMETELNGIVGVVTNGLFAARNADIFLCGTANGVE 216          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRPC (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 63/143 (44.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    +   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   86 EVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVIV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRPB (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 63/143 (44.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    +   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   86 EVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVIV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRP3 (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M3 GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 63/143 (44.06%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD   N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    +   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   86 EVDKNFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVTV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRP1 (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M1 GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 63/143 (44.06%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD   N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    +   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   86 EVDKNFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVTV 220          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_STRPF1.523e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRPD1.523e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRP81.523e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRP61.523e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_LACGA1.523e-1744.29Ribose-5-phosphate isomerase A OS=Lactobacillus ga... [more]
RPIA_THICR2.598e-1740.56Ribose-5-phosphate isomerase A OS=Thiomicrospira c... [more]
RPIA_STRPC2.598e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRPB2.598e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRP32.598e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRP12.598e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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