CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRE4 (Ribose-5-phosphate isomerase A OS=Streptococcus equi subsp. equi (strain 4047) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 63/143 (44.06%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD   N +KG G ALL EK+V   +K ++ V DESKLV  LG  KL  PVEVVQ    +   RL  +F   G +   R  +  K  ITD  N+IIDL     I++    G  + +  GVVEHGLF  M   VI+AG+ GV V
Sbjct:   86 EVDKAFNGIKGGGAALLMEKIVATPTKEYIWVVDESKLVDHLGAFKL--PVEVVQ----YGADRLFRVFERAGYKPSFRM-KGDKRLITDMQNFIIDLNLGC-IENPCEFGRLLDQTVGVVEHGLFNGMVDKVIVAGQAGVTV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PROMP (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 49/136 (36.03%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 635
            EVDP+  L+KG G   +REK+V + +   ++V DESKLV  L      +PVEV+   WK    +++D+  E+   + LR   +   P +TD  N I+D+ F+  I+D       I  + GV+E+GLF+D+A  V++
Sbjct:   84 EVDPDFQLIKGGGACHVREKLVASKANKLLIVIDESKLVQNL-NQVFPLPVEVMPSAWK----QVKDIISEMSGVSNLRMATKKAGPVVTDQGNLILDVLFDAGIRDPKDLEMRINNIPGVLENGLFVDLADKVLV 214          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_METTH (Ribose-5-phosphate isomerase A OS=Methanobacterium thermoautotrophicum GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 54/145 (37.24%), Postives = 87/145 (60.00%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLR--EGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVDP+LNL+KG G A   EK+V++++ SF+V+ DESKLV  LG     +PVEV+    +   ++L+     +G    +R  EG++G P +TDN N+++D  F   I D  +  + +  + GVVE+G+F  +A  VI     G+++
Sbjct:   88 EVDPDLNLIKGGGAAHTLEKIVDSSAASFIVIVDESKLVERLGA--FPLPVEVIPAACRPVKLKLE----SMGASVNIRSSEGKDG-PVVTDNGNFVLDAAFGV-IDDPGAMESRLNNIPGVVENGIFAGIADMVIAGTSEGLKI 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRS7 (Ribose-5-phosphate isomerase A OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 63/143 (44.06%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD   N +KG G ALL EK+V   +K ++ V DESKLV  LG  KL  PVEVVQ    +   RL  +F   G +   R  +  K  ITD  N+IIDL     I++    G  + +  GVVEHGLF  M   VI+AG+ GV V
Sbjct:   86 EVDKAFNGIKGGGAALLMEKIVATPTKEYIWVVDESKLVDHLGAFKL--PVEVVQ----YGADRLFRVFERAGYKPSFRM-KGDKRLITDMQNFIIDLDLGC-IENPFDFGRLLDQTVGVVEHGLFNGMVDKVIVAGQAGVTV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STREM (Ribose-5-phosphate isomerase A OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 63/143 (44.06%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD   N +KG G ALL EK+V   +K ++ V DESKLV  LG  KL  PVEVVQ    +   RL  +F   G +   R  +  K  ITD  N+IIDL     I++    G  + +  GVVEHGLF  M   VI+AG+ GV V
Sbjct:   86 EVDKAFNGIKGGGAALLMEKIVATPTKEYIWVVDESKLVDHLGAFKL--PVEVVQ----YGADRLFRVFERAGYKPSFRM-KGDKRLITDMQNFIIDLDLGC-IENPCEFGRLLDQTVGVVEHGLFNGMVDKVIVAGQAGVTV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHOSK (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFR---ELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            E D + NL+KG G ALL+EK+V  AS   VV+AD +K V+ LG     +PVEV+ F W+   + +++       LG E  LR   +  P +TD  NYI+DL+ +  I +    G  + ++ GVVE+GLF+D+   V++    G
Sbjct:   93 EFDADFNLIKGGGAALLQEKIVATASDRMVVIADAAKEVAHLGA--FPLPVEVIPFGWQSTKMLIEETLEGMDVLGREVTLRLSGDA-PLLTDEKNYILDLHLKR-IGEPRKLGLALNQIAGVVENGLFIDICDTVVVGHGDG 231          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHOS1 (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFR---ELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            E D + NL+KG G ALL+EK+V  AS   VV+AD +K V+ LG     +PVEV+ F W+   + +++       LG E  LR   +  P +TD  NYI+DL+ +  I +    G  + ++ GVVE+GLF+D+   V++    G
Sbjct:   93 EFDADFNLIKGGGAALLQEKIVATASDRMVVIADAAKEVAHLGA--FPLPVEVIPFGWQSTKMLIEETLEGMDVLGREVTLRLSGDA-PLLTDEKNYILDLHLKR-IGEPRQLGLALNQIAGVVENGLFIDICDTVVVGHGDG 231          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_METB6 (Ribose-5-phosphate isomerase A OS=Methanoregula boonei (strain 6A8) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 56/141 (39.72%), Postives = 78/141 (55.32%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMA--TAVIIAGK 644
            + DP+  L+KGRG A+ REK V +A+  F+VV DE+K+V  L G    +PVE + F  K  L +L    R LGC   +RE  +   P ITDN N+I+D  FE  I D       I  + GV+E GLF  +   T +I+  +
Sbjct:   92 QADPQFRLIKGRGAAITREKCVASAAFRFIVVVDEAKMVKKLAG---VVPVETLPFATKTALAQL----RGLGCRPFIREAVKKDGPVITDNGNFIVDCQFE-EIPDPALLEAGIAAIPGVIESGLFTRLTGNTTIIVGNE 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_LACLM (Ribose-5-phosphate isomerase A OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpiA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 59/149 (39.60%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEA---KLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            E+D  LN +KG G ALL EK+V   SK ++ + DESKL   LG  K  +PVEV+ +         + LF+E    A     R  E G+  ITD  ++IIDL+    I++      E+  + GVVEHGLF  M   VI+AG  GV++ S+
Sbjct:   86 EIDSHLNGIKGGGAALLMEKIVATYSKDYIWIVDESKLSENLGSFK--VPVEVITY-------GSEQLFKEFERAAYAPTWRLNEEGEKLITDMQHFIIDLHI-AKIENPQKLADELDLMVGVVEHGLFNGMVKKVIVAGSDGVKIISQ 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_THISH (Ribose-5-phosphate isomerase A OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rpiA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 63/161 (39.13%), Postives = 87/161 (54.04%), Query Frame = 3
Query:  171 GMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            G+ ++D  +   LP+ +    E + EL+L+KG GGAL REK+V AAS  FV +ADESKLV  LG     +PVEV+     +    L     +LG +  LREG     + TDN N I+D++    I D V+    I +L GVV  G+F      V+I G  G
Sbjct:   64 GIQVMDLNTAGQLPLYVDGADESNAELHLIKGGGGALTREKIVAAASDKFVCIADESKLVDVLGA--FPLPVEVIPMARAYVAREL----TKLGGQPVLREG-----FTTDNGNVILDVH-NLQISDPVAMEDHINQLPGVVTVGIFAQRPADVLILGSAG 212          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_STRE42.598e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus eq... [more]
RPIA_PROMP2.598e-1736.03Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_METTH2.598e-1737.24Ribose-5-phosphate isomerase A OS=Methanobacterium... [more]
RPIA_STRS73.393e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus eq... [more]
RPIA_STREM3.393e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus eq... [more]
RPIA_RHOSK4.431e-1737.76Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]
RPIA_RHOS14.431e-1737.76Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]
RPIA_METB64.431e-1739.72Ribose-5-phosphate isomerase A OS=Methanoregula bo... [more]
RPIA_LACLM5.787e-1739.60Ribose-5-phosphate isomerase A OS=Lactococcus lact... [more]
RPIA_THISH7.559e-1739.13Ribose-5-phosphate isomerase A OS=Thioalkalivibrio... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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