CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_THEEB (Ribose-5-phosphate isomerase A OS=Thermosynechococcus elongatus (strain BP-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 635
            EVDP  NL+KG G A  REK+V++ ++ F+VV D SKLV  L GS   +PVEV+ F     +  +    + LG E +LR G +   P +TD  N+++D+ F+  I D       I  + GVVE+GLF+++A  +++
Sbjct:   92 EVDPAKNLIKGGGAAHTREKIVDSLAEQFLVVVDSSKLVQKL-GSTFPVPVEVLPFA----VAPVTRALKALGGEPELRMGVKKDGPVVTDQGNFVLDVRFD-DIPDPAELEKAINNIPGVVENGLFVNVADVILV 221          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_LISIN (Ribose-5-phosphate isomerase A OS=Listeria innocua GN=rpiA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 55/144 (38.19%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVK 662
            E++     +KG GGALLREKMV  AS   + V  E KLV+ LG  K  +P+EV+ F WK    +++ +    G E  LR+  +G+ Y T+N NYI+D+  +T   +  +   ++  + GV+EHGLFL     +II GK   E++
Sbjct:   85 EINQAFQGIKGGGGALLREKMVAQASSKNIWVVGEEKLVTELG--KFPLPLEVIPFGWK----QIKRMLENDGVETTLRKQSSGEIYETNNGNYILDIINQT-FTNPEAWHEKLAGIPGVLEHGLFLHYVD-IIICGKASGEIE 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SYNPW (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain WH7803) GN=rpiA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 635
            EVDP   L+KG G   ++EK+V A +  F+VV D +KLV  L    L +PVEV+   W    V++    + +G +A+LR       P +TD  N ++D+ FE  I D  S   EI  + GV+E+GLF+++A  V++
Sbjct:   91 EVDPAFQLIKGGGACHVQEKLVAARADRFIVVVDSTKLVERLNLGFL-LPVEVLPGAW----VQISQQLKAMGGDAELRMATRKAGPVVTDQGNLVLDVRFEGGIADPASLEKEINNIPGVLENGLFVNLADEVLV 221          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHOS5 (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpiA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 54/143 (37.76%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDL---FRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            E D E NL+KG G ALL+EK+V  AS   +V+AD +K V+ LG     +PVEV+ F W+   + +++       LG E  LR      P +TD  NYI+DL+  T I         + ++ GVVE+GLF+D+   V++    G
Sbjct:   93 EFDSEFNLIKGGGAALLQEKIVATASDRMIVIADAAKEVAQLGA--FPLPVEVIPFGWQSTRMLIEEALIGLDVLGREVTLRRSGEA-PLLTDEKNYILDLHL-TRIGHPRQLALTLNQIAGVVENGLFIDICDTVVVGHGDG 231          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_ANAVT (Ribose-5-phosphate isomerase A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpiA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 51/136 (37.50%), Postives = 83/136 (61.03%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 635
            EVDP+ NL+KG G A  REK+V+  +  F+VV D  KLV  L GS  A+PVEV+       +  + +  ++LG + +LR G +   P ITD  N+++D+ F++ I D V+    +  + GV+E+G+F++ A  V++
Sbjct:   94 EVDPQKNLIKGGGAAHTREKVVDYLANQFIVVVDSGKLVDRL-GSVFAVPVEVIPMA----ITPVTNAIKQLGGKPELRMGVKKAGPVITDQGNFVLDVRFDS-IDDPVNLEKILNNIPGVLENGIFVNCADIVLV 223          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA2_YERPS (Ribose-5-phosphate isomerase A 2 OS=Yersinia pseudotuberculosis GN=rpiA2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 49/137 (35.77%), Postives = 77/137 (56.20%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCE--AKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 635
            E+D   N++KG G  LL EK++  ASK  + + DE+K+V+ LG  +  +PVE+V F WK    R++ +  E G      +R    G P ITD+ N+I+D +    I        E+ ++ GVVE+GLF   AT +++
Sbjct:   90 EIDRRFNMIKGGGACLLWEKIIAHASKRMICICDETKIVNCLG--QFPLPVEIVPFAWKQTERRVERVLAEQGLHHVPIIRRMGGGHPVITDSGNFILDCHCGAIITAPEPLEIELNRIPGVVENGLFTREATGMVV 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA2_YERPE (Ribose-5-phosphate isomerase A 2 OS=Yersinia pestis GN=rpiA2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 49/137 (35.77%), Postives = 77/137 (56.20%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCE--AKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 635
            E+D   N++KG G  LL EK++  ASK  + + DE+K+V+ LG  +  +PVE+V F WK    R++ +  E G      +R    G P ITD+ N+I+D +    I        E+ ++ GVVE+GLF   AT +++
Sbjct:   90 EIDRRFNMIKGGGACLLWEKIIAHASKRMICICDETKIVNCLG--QFPLPVEIVPFAWKQTERRVERVLAEQGLHHVPIIRRMGGGHPVITDSGNFILDCHCGAIITAPEPLEIELNRIPGVVENGLFTREATGMVV 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PROM1 (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain NATL1A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGE-NGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVDP+  L+KG G   ++EK+V A +K F+VV D +KLV  L      +PVEV+   WK    ++Q     LG E  LR  +    P +TD  N I+DL F   I       T+I  + GV+E+GLF+++   V++ GK   +V
Sbjct:   90 EVDPKFQLIKGGGACHVQEKLVAALAKKFIVVVDSTKLVEKL-NLDFKLPVEVLPSAWK----QVQKTLINLGGEGNLRMAQKKAGPIVTDQGNLILDLTFRNGIDQPELLETQINNIPGVLENGLFVNLTDEVLV-GKVESDV 227          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_ENTFA (Ribose-5-phosphate isomerase A OS=Enterococcus faecalis GN=rpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 56/140 (40.00%), Postives = 79/140 (56.43%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            E+  +   +KG G ALL EK+V   SK  + + D+SK+V  LG     +PVEVV +  +    +L  LF E G    LR    G+  ITD  ++IIDL+ E  I D  + G+ +  L GVVEHGLFL+M + VI+  + G
Sbjct:   85 EISADFQGIKGGGAALLFEKIVATYSKKCIWIVDKSKMVDDLGA--FPLPVEVVPYGSR----QLVHLFEEKGYHPTLRLNAAGETLITDGGHHIIDLHLE-KITDPEALGSYLDNLVGVVEHGLFLNMVSMVIVGYEDG 217          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_THIDA (Ribose-5-phosphate isomerase A OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 65/164 (39.63%), Postives = 89/164 (54.27%), Query Frame = 3
Query:  171 GMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 656
            G+ +LD  S   L V +    E+     ++KG GGAL REK+V A SK FV +AD+SKLV  LG  K  +PVEV+          L     +LG + +LREG     + TDN N I+D++    I D VS  T I ++ GVV +GLF      V++ G  TGV+
Sbjct:   63 GIQVLDLNSVGELEVYVDGADEITQHFAMIKGGGGALTREKIVAACSKQFVCIADDSKLVDVLG--KFPLPVEVIPMARSHVARELV----KLGGQPRLREG-----FTTDNGNVILDVH-NLSIIDPVSLETAINQIVGVVTNGLFARRGADVLLLGTSTGVK 214          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_THEEB7.559e-1738.97Ribose-5-phosphate isomerase A OS=Thermosynechococ... [more]
RPIA_LISIN7.559e-1738.19Ribose-5-phosphate isomerase A OS=Listeria innocua... [more]
RPIA_SYNPW1.289e-1637.50Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_RHOS51.289e-1637.76Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]
RPIA_ANAVT1.289e-1637.50Ribose-5-phosphate isomerase A OS=Anabaena variabi... [more]
RPIA2_YERPS1.289e-1635.77Ribose-5-phosphate isomerase A 2 OS=Yersinia pseud... [more]
RPIA2_YERPE1.289e-1635.77Ribose-5-phosphate isomerase A 2 OS=Yersinia pesti... [more]
RPIA_PROM11.684e-1637.50Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_ENTFA1.684e-1640.00Ribose-5-phosphate isomerase A OS=Enterococcus fae... [more]
RPIA_THIDA2.199e-1639.63Ribose-5-phosphate isomerase A OS=Thiobacillus den... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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