CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SYNS3 (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain CC9311) GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 635
            EVDP   L+KG G   ++EK+V   ++ F+VV D +KLV  L    L +PVEV+   W    V++Q   + +G  A+LR       P +TD  N ++D+ FE  I D ++   +I  L GV+E+GLF+++A  V++
Sbjct:   91 EVDPSFQLIKGGGACHVQEKLVADRAERFIVVVDSTKLVRCLNLDFL-LPVEVLPGAW----VQVQSRLKSMGGVAELRMATRKAGPVVTDQGNLVLDVRFENGISDPIALERDINNLPGVLENGLFVNLADEVLV 221          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_LACJO (Ribose-5-phosphate isomerase A OS=Lactobacillus johnsonii GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 60/140 (42.86%), Postives = 76/140 (54.29%), Query Frame = 3
Query:  234 VDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFE-TPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            VD  L+ +KG GGAL  EK V   SK  + + DESKLV  L G    +PVEV+    + N  R    F   G + + R  + GK Y+T   NYIIDL  + TP+  G++    +    GVVEHGLFLDM   VIIA   G
Sbjct:   93 VDDNLDGIKGGGGALTLEKNVAINSKKIIWIVDESKLVHHLSG--FPLPVEVLPVSAEQNFKR----FEAEGLKPQWRLNDEGKRYVTHYGNYIIDLAADPTPVPHGLA--DYLDHTVGVVEHGLFLDMCDEVIIAHSDG 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_DICDI (Ribose-5-phosphate isomerase OS=Dictyostelium discoideum GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 59/168 (35.12%), Postives = 91/168 (54.17%), Query Frame = 3
Query:  171 GMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGS-KLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            G+ L D   T  L + +    EVD + NL+KG GG  L+EK+V  +SK  V+VAD +K  + LG + K  +P+EVV   +   + +L+     L  + ++   + G P +TDN N+IID  F  P+ +      +I  + GVVE GLF++M T +   G+T    K K
Sbjct:   65 GLELSDLSRTPELDITIDGADEVDKDFNLIKGGGGCQLQEKIVAYSSKKLVIVADHTKESTELGENWKKGIPIEVVPMAYVPVMKKLESSSFSLTPKLRMAVNKAG-PVVTDNGNFIIDAQFSKPLSNIPQLAIDIKMIPGVVETGLFVNM-TKIAYFGQTDGTCKVK 230          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_CAUCR (Ribose-5-phosphate isomerase A OS=Caulobacter crescentus GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 57/142 (40.14%), Postives = 78/142 (54.93%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC-EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653
            E+ P L+L+KG G ALLREK+V  AS   VV+AD +K V  LG  K  +P+EVV+F       RL D+  E      +LR  E G   +TD  N I D+     I+D  +    +  + GVV+HGLFLD+A   ++    GV
Sbjct:   85 EIGPGLSLIKGGGAALLREKLVWEASTRCVVIADAAKRVPALG--KFPLPIEVVRFGHVHTGYRLADIAAEFDLPPPRLRTAERGM-VVTDGGNLIYDM-ASGKIEDPTALAAALKSVTGVVDHGLFLDLADEALVGTDEGV 222          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_CAUCN (Ribose-5-phosphate isomerase A OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 57/142 (40.14%), Postives = 78/142 (54.93%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC-EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653
            E+ P L+L+KG G ALLREK+V  AS   VV+AD +K V  LG  K  +P+EVV+F       RL D+  E      +LR  E G   +TD  N I D+     I+D  +    +  + GVV+HGLFLD+A   ++    GV
Sbjct:   85 EIGPGLSLIKGGGAALLREKLVWEASTRCVVIADAAKRVPALG--KFPLPIEVVRFGHVHTGYRLADIAAEFDLPPPRLRTAERGM-VVTDGGNLIYDM-ASGKIEDPTALAAALKSVTGVVDHGLFLDLADEALVGTDEGV 222          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_CANAL (Ribose-5-phosphate isomerase OS=Candida albicans GN=RKI1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 63/152 (41.45%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGS-KLAMPVEVVQFCWKFNLVRLQDLFRELGCE-AKLREGENGK--PYITDNFNYIIDLYF-ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG-VEVKSK 668
            EVDP+LNL+KG G  L +EK+V A++K FVVVAD  K    LG S +  +P+E+V   +      +Q+L ++LG +   LR+G   K  P ITDN N+++D  F E  I +      +I  L GVVE GLF +MA       + G V V SK
Sbjct:  115 EVDPQLNLIKGGGACLFQEKLVAASAKKFVVVADYRKKSDKLGQSWRQGVPIEIVPNSYS---KIIQELSKKLGAKNVDLRQGGKAKAGPIITDNNNFLLDADFGEIEIDNVGKLHEQIKLLVGVVETGLFTNMANKAYFGEEDGSVSVWSK 263          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_ANASP (Ribose-5-phosphate isomerase A OS=Anabaena sp. (strain PCC 7120) GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 51/136 (37.50%), Postives = 82/136 (60.29%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 635
            EVDP  NL+KG G A  REK+V+  +  F+VV D  KLV  L GS  A+PVEV+       +  + +  ++LG + +LR G +   P ITD  N+++D+ F++ I D V+    +  + GV+E+G+F++ A  V++
Sbjct:   94 EVDPHKNLIKGGGAAHTREKVVDYLANQFIVVVDSGKLVDRL-GSVFAVPVEVIPMA----ITPVTNAIKQLGGKPELRMGVKKAGPVITDQGNFVLDVRFDS-IDDPVNLEKILNNIPGVLENGIFVNCADIVLV 223          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHOS4 (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 53/143 (37.06%), Postives = 81/143 (56.64%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFR---ELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            E D + NL+KG G ALL+EK+V  AS   VV+AD +K V+ LG     +PVEV+ F W+   + +++       LG E  LR   +  P +TD  NYI+DL+ +  I +       + ++ GVVE+GLF+D+   V++    G
Sbjct:   93 EFDADFNLIKGGGAALLQEKIVATASDRMVVIADAAKEVAHLGA--FPLPVEVIPFGWQSTKMLIEETLEGMDVLGREVTLRLSGDA-PLLTDEKNYILDLHLKR-IGEPRPLALALNQIAGVVENGLFIDICDTVVVGHGDG 231          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_METEP (Ribose-5-phosphate isomerase A OS=Methylobacterium extorquens (strain PA1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 60/143 (41.96%), Postives = 77/143 (53.85%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYF-ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            EVD  L L+KG G ALLREK+V  AS+  VV+AD SK V  LG     +PVEV  F        ++      GC  E   R   +G P +TD  + I+DL     P  + +SAG  +  + GVVEHGLFL +A A I+A   G
Sbjct:   87 EVDGSLRLIKGGGAALLREKIVAVASRRMVVIADASKHVETLGA--FPLPVEVNLFGIGATTRAVEAAVARAGCTGETVRRHDASGAPLLTDGGHAILDLRLGRIPDPEALSAG--LWAVPGVVEHGLFLGIADAAILAAAEG 225          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_METC4 (Ribose-5-phosphate isomerase A OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 59/143 (41.26%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKL--REGENGKPYITDNFNYIIDLYF-ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            EVD  L L+KG G ALLREK+V  AS+  VV+AD SK V  LG     +PVEV  F        ++      GC  ++  R   +G P +TD  + I+DL     P  + +SAG  +  + GVVEHGLFL +A A I+A   G
Sbjct:   87 EVDGSLRLIKGGGAALLREKIVAVASRRMVVIADASKHVETLGA--FPLPVEVNLFGIGATTRAVEAAVARAGCTGEIVRRHEASGAPLLTDGGHAILDLRLGRIPDPEALSAG--LWAVPGVVEHGLFLGIADAAILAAAEG 225          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_SYNS32.199e-1636.76Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_LACJO2.199e-1642.86Ribose-5-phosphate isomerase A OS=Lactobacillus jo... [more]
RPIA_DICDI2.199e-1635.12Ribose-5-phosphate isomerase OS=Dictyostelium disc... [more]
RPIA_CAUCR2.199e-1640.14Ribose-5-phosphate isomerase A OS=Caulobacter cres... [more]
RPIA_CAUCN2.199e-1640.14Ribose-5-phosphate isomerase A OS=Caulobacter cres... [more]
RPIA_CANAL2.199e-1641.45Ribose-5-phosphate isomerase OS=Candida albicans G... [more]
RPIA_ANASP2.199e-1637.50Ribose-5-phosphate isomerase A OS=Anabaena sp. (st... [more]
RPIA_RHOS42.872e-1637.06Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]
RPIA_METEP2.872e-1641.96Ribose-5-phosphate isomerase A OS=Methylobacterium... [more]
RPIA_METC42.872e-1641.26Ribose-5-phosphate isomerase A OS=Methylobacterium... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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