CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BARBK (Ribose-5-phosphate isomerase A OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 51/141 (36.17%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENG-KPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            E+ P + L+KG GGALLREK+V AAS   +++ADE+K+V  LG    A+P+ V QF        ++ + + LG   K+    NG  P+ TD+ ++I D  +   ++  + +   + ++ GV+EHGLF+ +A+  IIA   G
Sbjct:   87 EIGPNMTLIKGGGGALLREKIVAAASHEMLIIADETKVVKTLGA--FALPIAVNQFGLSVTRSAIEKMAKGLGLSGKVTLRMNGDNPFKTDDGHFIFDASWGHIVQPKLLSNA-LFEIPGVIEHGLFVGLASRSIIAMADG 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BIFAA (Ribose-5-phosphate isomerase A OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 56/143 (39.16%), Postives = 74/143 (51.75%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD   N +KG G ALL EK+V   S   V + DESK+V  +G  K  +PVEV+     F   ++   F   G +  LR   NG+P  TD  NY++DL+ E  I        ++    GVVEHGLFL+M   VI+    G  V
Sbjct:   91 EVDKNFNGIKGGGAALLWEKIVATNSNKIVWIVDESKVVDTIG--KFPLPVEVI----PFGAGQVVKKFEAKGYKPVLRLDANGEPVRTDENNYVVDLHLER-IDHPQELAQDLITTVGVVEHGLFLNMVDQVIVGDPNGPRV 226          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BARHE (Ribose-5-phosphate isomerase A OS=Bartonella henselae GN=rpiA PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 50/137 (36.50%), Postives = 81/137 (59.12%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENG-KPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIA 638
            E+ PE+ L+KG GGALL EK+V +AS++  V+ADE+K+V  LG    A+P+EV  F      + ++     LG   ++    NG  P+ TD  ++I D ++   ++  + +   +  + GVVEHGLFL +A+  I+A
Sbjct:   87 EIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLGA--FALPIEVNPFGIHATRIAIEKAADNLGLSGEITLRMNGDDPFKTDGGHFIFDAFWGRILQPKLLSEALLA-IPGVVEHGLFLGLASRAIVA 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PICST (Ribose-5-phosphate isomerase OS=Pichia stipitis GN=RKI1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 58/133 (43.61%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGS-KLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGK--PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMA 620
            EVDP LNL+KG G  L +EK+V A++K+FVVVAD  K    LG   K  +P+E+V   +      +QDL +       LR+G + K  P ITDN N+++D  F   IKD  +   +I  L GVVE GLF  MA
Sbjct:   92 EVDPALNLIKGGGACLFQEKLVAASAKTFVVVADYRKKSDNLGIQWKQGVPIEIVPNSY---AKVIQDLKKLGAITVNLRQGGSAKAGPIITDNNNFLLDADFGA-IKDPKALHDQIKALVGVVETGLFTSMA 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SYNP2 (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpiA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 635
            EVDP+ NL+KG G A  REK+V+A +  FVVV D  KLV  L GS   +PVEV+       +  +      LG + +LR G +   P +TD  N ++DL F   I D  +   +I  + GV+E+GLF+ +A  +++
Sbjct:   90 EVDPQKNLIKGGGAAHTREKVVDALANKFVVVVDSGKLVDRL-GSTFLLPVEVIPMA----ITPVMRQLEALGGKPELRMGVKKAGPVVTDEGNLVVDLKF-AGIDDPATLEQKINNIPGVLENGLFVGVADVILV 219          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SYNY3 (Ribose-5-phosphate isomerase A OS=Synechocystis sp. (strain PCC 6803) GN=rpiA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 52/136 (38.24%), Postives = 79/136 (58.09%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 635
            EVDP+ NL+KG G A  REK+V+A +++F+VV D  KLV  L GS   +PVEV+       L  +     +LG + +LR G +   P +TD  N +ID+ F+  I +       I  L GV+E+GLF+ +A  +++
Sbjct:   93 EVDPQKNLIKGGGAAHTREKIVDALAETFLVVVDSGKLVDKL-GSTFLLPVEVIPMA----LTPVMRALAKLGGKPELRMGVKKAGPVVTDQGNLVIDVKFDA-ITNPAELEKTINNLPGVLENGLFVGVADVILV 222          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_ROSDO (Ribose-5-phosphate isomerase A OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpiA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 56/148 (37.84%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRE---LGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIA-GKTGVEVK 662
            E D   NL+KG GGALL EK+V A+S   VV+AD  K V  LG     +P+EV+ F  +     + +       LG ++ LR  +  KP++TD  N+IIDL+ +  I D       + ++ GVVE+GLF+D+   V++  G   VEV+
Sbjct:   93 EFDGAFNLIKGGGGALLHEKVVAASSDRMVVIADVGKEVETLGA--FPLPIEVIPFGLQTTHALVDETLVSMDVLGRDSSLRM-DGDKPFVTDEGNHIIDLHLKR-IGDARQLALTLNQVPGVVENGLFIDICDTVVLGFGDGKVEVR 236          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_NITMU (Ribose-5-phosphate isomerase A OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpiA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 56/161 (34.78%), Postives = 94/161 (58.39%), Query Frame = 3
Query:  171 GMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            G+ ++D  +   LP+ +    E+ P L+++KG GGAL REK+V A +K F+ +AD+SKLV  LG  K  +PVEV+    + ++ R  ++ R LG +  LR+G     + TDN N I+D++    I + +   TE+ ++ G+V +GLF      +++ G  G
Sbjct:   64 GIEVMDLNNVDELPLYVDGADEITPHLHMIKGGGGALTREKIVAAVAKKFICIADQSKLVDVLG--KFPLPVEVIPMA-RGHVAR--EIVR-LGGQPMLRQG-----FTTDNGNVILDVH-ALQILNPIELETELNQITGIVTNGLFARRPADLLLLGDEG 212          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_CYAP4 (Ribose-5-phosphate isomerase A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpiA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 53/136 (38.97%), Postives = 77/136 (56.62%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 635
            EVDP+ NL+KG G A  REK+V+A +  F+VV D SKLV  L GS   +PVEV+       L  +      LG E +LR G +   P ITD  N ++D+ F   I D       +  + GVVE+G+F+++A  +++
Sbjct:   94 EVDPQKNLIKGGGAAHTREKVVDALADLFIVVVDSSKLVDQL-GSTFPVPVEVLPMA----LTPVMRAVTRLGGEPQLRMGVKKDGPVITDQGNMVLDVKF-AAIPDPAELEKTLNNIPGVVENGIFVNLAKVILV 223          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BARQU (Ribose-5-phosphate isomerase A OS=Bartonella quintana GN=rpiA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 51/141 (36.17%), Postives = 84/141 (59.57%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGK-PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            E+ PE+ L+KG GGAL REK+V AAS++ +V+ADE+K+V  LG    A+P+EV  F        ++ +  +LG   ++    NG+ P+ TD  ++I D ++   ++  + +   +  + GVVEHGLF  +A+  I+A   G
Sbjct:   87 EIGPEMTLIKGGGGALWREKIVAAASRAMLVIADETKVVKTLGA--FALPIEVNPFGMPATRRLIEKVADDLGLSGEIILRMNGENPFKTDGGHFIFDAFWGCILQPRLLSEALLA-IPGVVEHGLFWGLASRAIVAMADG 224          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_BARBK2.872e-1636.17Ribose-5-phosphate isomerase A OS=Bartonella bacil... [more]
RPIA_BIFAA3.751e-1639.16Ribose-5-phosphate isomerase A OS=Bifidobacterium ... [more]
RPIA_BARHE3.751e-1636.50Ribose-5-phosphate isomerase A OS=Bartonella hense... [more]
RPIA_PICST4.899e-1643.61Ribose-5-phosphate isomerase OS=Pichia stipitis GN... [more]
RPIA_SYNP26.399e-1638.24Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_SYNY38.357e-1638.24Ribose-5-phosphate isomerase A OS=Synechocystis sp... [more]
RPIA_ROSDO8.357e-1637.84Ribose-5-phosphate isomerase A OS=Roseobacter deni... [more]
RPIA_NITMU8.357e-1634.78Ribose-5-phosphate isomerase A OS=Nitrosospira mul... [more]
RPIA_CYAP48.357e-1638.97Ribose-5-phosphate isomerase A OS=Cyanothece sp. (... [more]
RPIA_BARQU8.357e-1636.17Ribose-5-phosphate isomerase A OS=Bartonella quint... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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