CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRA1 (Ribose-5-phosphate isomerase A OS=Streptococcus agalactiae serotype Ia GN=rpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 68/146 (46.58%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVDP+ N +KG GGALL EK+V   +K ++ V DESKLV  LG  KL  PVEVV    ++   RL  +F+  G     RE E G  +ITD  NYIIDL  +  I+D      E+    GVVEHGLF  M   VI+AGK G+++  K
Sbjct:   86 EVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKL--PVEVV----RYGSERLFRVFKSKGYCPSFRETE-GDRFITDMGNYIIDLDLK-KIEDPKQLANELDHTVGVVEHGLFNGMVNKVIVAGKNGLDILEK 223          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_CHLSY (Ribose-5-phosphate isomerase A OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 59/142 (41.55%), Postives = 88/142 (61.97%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            EVDP+L+L+KG GGALLREKMV  AS+   ++ D+SKL   L G++ A+P+EVV F W+     L+      G   +LR   +G+P+ TD  N I+D +   P+ D  +   ++    G+VEHGLF+ +AT + +AG  GV+
Sbjct:   92 EVDPQLSLIKGGGGALLREKMVAQASRRVAIIVDDSKLSPAL-GTRFALPLEVVDFGWRATARWLE----AQGGTVQLRLRADGQPFRTDQGNLILD-WKCGPLNDPAALAAQLSARAGIVEHGLFIGLATDLFVAGPDGVQ 227          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_CHLAA (Ribose-5-phosphate isomerase A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 59/142 (41.55%), Postives = 88/142 (61.97%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            EVDP+L+L+KG GGALLREKMV  AS+   ++ D+SKL   L G++ A+P+EVV F W+     L+      G   +LR   +G+P+ TD  N I+D +   P+ D  +   ++    G+VEHGLF+ +AT + +AG  GV+
Sbjct:   92 EVDPQLSLIKGGGGALLREKMVAQASRRVAIIVDDSKLSPAL-GTRFALPLEVVDFGWRATARWLE----AQGGTVQLRLRADGQPFRTDQGNLILD-WKCGPLNDPAALAAQLSARAGIVEHGLFIGLATDLFVAGPDGVQ 227          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BACHK (Ribose-5-phosphate isomerase A OS=Bacillus thuringiensis subsp. konkukian GN=rpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 56/142 (39.44%), Postives = 85/142 (59.86%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            E+D  L L+KG GGALLREK+V ++SK  +++ DESK+V+ LG     +P+E++ F WK    + +   + LGC+  LR  +N + +ITDN N I+D  F   I         +  + GVVE GLF++M +  II  K G++
Sbjct:   84 EIDSNLQLIKGGGGALLREKIVASSSKELIIIVDESKVVTRLG--TFPLPIEIIPFAWK----QTESKIQSLGCQTTLRL-KNNETFITDNNNMIVDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGIQ 218          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BACCZ (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ZK / E33L) GN=rpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 57/142 (40.14%), Postives = 85/142 (59.86%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            E+D  L L+KG GGALLREK+V ++SK  +++ DESK+V+ LG     +P+E++ F WK    + +   + LGC+  LR  +N + +ITDN N IID  F   I         +  + GVVE GLF++M +  II  K G++
Sbjct:   84 EIDSNLQLIKGGGGALLREKIVASSSKELIIIIDESKVVTRLG--TFPLPIEIIPFAWK----QTESKIQSLGCQTTLRL-KNNETFITDNNNMIIDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGIQ 218          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRPI (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rpiA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 64/143 (44.76%), Postives = 88/143 (61.54%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    +   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I+D +  G E+  + GVVEHGLF  M   VI+AG+ GV++
Sbjct:   86 EVDSQFNGIKGGGGALLMEKIVATPSKEYIWVVDESKLVDKLGAFKL--PVEVVQ----YGAEQIFRRFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IEDPIVFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQI 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHOP5 (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain BisA53) GN=rpiA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 58/145 (40.00%), Postives = 88/145 (60.69%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            E+DP LNLVKG GGALLREK+V AAS   +V+AD+SKLV  LG  +  +P+EV+ F        ++      G   E KLR G++G  ++TD  ++I+D +    I D       +  + G+VEHGLF+ +A++V++A   G+ +
Sbjct:   87 EIDPALNLVKGGGGALLREKIVAAASGRMIVIADDSKLVETLG--RFPLPIEVIPFGLAATRRAIEQALAVCGIDGELKLRNGKDGHAFVTDGGHWIVDAHLGR-IPDAPRLAGLLSVIPGIVEHGLFIGLASSVVLASPHGIRI 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA1_OCEIH (Ribose-5-phosphate isomerase A 1 OS=Oceanobacillus iheyensis GN=rpiA1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 64/165 (38.79%), Postives = 96/165 (58.18%), Query Frame = 3
Query:  171 GMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVK 662
            G+ L D  + + L + +    EVD   +L+KG G AL REK++  A+K FV++ D+SK+V  LG  + ++PVEV+ F W+    R  +   +LGC   +R  E  +P +TDN NYI+D  F+  I        EI  + GV+E GLF+DMAT VI+  K  + +K
Sbjct:   68 GIPLTDFSNVKELDITIDGADEVDANNHLIKGGGAALFREKIIAQAAKEFVIIVDQSKVVETLG--EFSLPVEVLPFSWQ----RTANEISKLGCVPTVRVHEE-EPLVTDNGNYILDCPFKV-IPHPDKLNKEIKSIVGVIETGLFIDMATTVIVGEKDNIYIK 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_DINSH (Ribose-5-phosphate isomerase A OS=Dinoroseobacter shibae (strain DFL 12) GN=rpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 62/143 (43.36%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFREL---GCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            E DP LNL+KG GGALL+EK+V  AS   +V+ D SK V+ LG     +PVEV++F W+     +++    +   G EA LR  ENG PY+TD  N+I+DL+ E  I +       + +L GVVE+GLFLD+   V+I    G
Sbjct:   93 EFDPTLNLIKGGGGALLQEKIVATASDRMIVITDASKAVATLGA--FPLPVEVIRFGWETTRTLIEETLVNVDVGGREAILRM-ENGMPYVTDEGNFIVDLHLER-IGNPRQVSLVLNQLPGVVENGLFLDICDVVVIGKSDG 231          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRZJ (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain JJA) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS 665
            EVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    +   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I++ ++ G E+  + GVVEHGLF  M   VI+AG+ GV++ +
Sbjct:   86 EVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRRFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQIST 222          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_STRA12.682e-2246.58Ribose-5-phosphate isomerase A OS=Streptococcus ag... [more]
RPIA_CHLSY2.682e-2241.55Ribose-5-phosphate isomerase A OS=Chloroflexus aur... [more]
RPIA_CHLAA2.682e-2241.55Ribose-5-phosphate isomerase A OS=Chloroflexus aur... [more]
RPIA_BACHK2.682e-2239.44Ribose-5-phosphate isomerase A OS=Bacillus thuring... [more]
RPIA_BACCZ2.682e-2240.14Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_STRPI4.575e-2244.76Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_RHOP54.575e-2240.00Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA1_OCEIH4.575e-2238.79Ribose-5-phosphate isomerase A 1 OS=Oceanobacillus... [more]
RPIA_DINSH5.975e-2243.36Ribose-5-phosphate isomerase A OS=Dinoroseobacter ... [more]
RPIA_STRZJ7.804e-2243.45Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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