CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRPJ (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS 665
            EVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    +   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I++ ++ G E+  + GVVEHGLF  M   VI+AG+ GV++ +
Sbjct:   86 EVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRRFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQIST 222          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHOP2 (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain HaA2) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAK--LREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653
            E+DP L L+KG GGALLREK+V AAS   +V+ADE+K V  LG     +PVEV+ F        ++    E+G   +  LREG++G  ++TD  ++IID +    I D       +  + GVVEHGLF+ +A+ V++AG  G+
Sbjct:   87 EIDPRLELIKGGGGALLREKIVAAASDRMIVIADETKWVDCLG--HFPLPVEVIPFGLAATRRAIEQACAEVGASGRLQLREGKDGHAFVTDGGHWIIDAHLGR-IPDAPRLAQLLSAIPGVVEHGLFIGIASTVVLAGTDGI 226          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRZT (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS 665
            EVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    +   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I++ ++ G E+  + GVVEHGLF  M   VI+AG+ GV++ +
Sbjct:   86 EVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQIST 222          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRZP (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain P1031) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS 665
            EVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    +   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I++ ++ G E+  + GVVEHGLF  M   VI+AG+ GV++ +
Sbjct:   86 EVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQIST 222          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRR6 (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpiA PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS 665
            EVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    +   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I++ ++ G E+  + GVVEHGLF  M   VI+AG+ GV++ +
Sbjct:   86 EVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQIST 222          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRPN (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS 665
            EVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    +   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I++ ++ G E+  + GVVEHGLF  M   VI+AG+ GV++ +
Sbjct:   86 EVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQIST 222          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRP7 (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain 70585) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS 665
            EVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    +   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I++ ++ G E+  + GVVEHGLF  M   VI+AG+ GV++ +
Sbjct:   86 EVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQIST 222          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRP4 (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS 665
            EVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    +   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I++ ++ G E+  + GVVEHGLF  M   VI+AG+ GV++ +
Sbjct:   86 EVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQIST 222          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRP2 (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS 665
            EVD + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    +   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I++ ++ G E+  + GVVEHGLF  M   VI+AG+ GV++ +
Sbjct:   86 EVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRHFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQIST 222          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_THERP (Ribose-5-phosphate isomerase A OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.331e-21
Identity = 67/165 (40.61%), Postives = 97/165 (58.79%), Query Frame = 3
Query:  171 GMHLLDKRSTRALPVALM-IHEVDPE-LNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            G+ L D  S   + +A+    EV+   L L+KGRGGAL+REK+V   ++  V++ D+SKLV+ L G++  +PVEVV F W++    L+D    LG    LR    G P+ +DN N I+D+ F   I D       I  L GV++HGLFLDMA  VI+  +TG+ +
Sbjct:   66 GIELRDPDSVDRIDLAIDGADEVEERSLGLLKGRGGALVREKLVARMARRLVIIIDDSKLVAAL-GARFPLPVEVVPFGWRWCARWLED----LGGRPTLRCRPTGHPFRSDNGNLILDVAFGA-IADPAWLDRTIKMLPGVIDHGLFLDMADLVIVGSETGIRL 224          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_STRPJ7.804e-2243.45Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_RHOP27.804e-2241.26Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_STRZT1.019e-2143.45Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRZP1.019e-2143.45Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRR61.019e-2143.45Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRPN1.019e-2143.45Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRP71.019e-2143.45Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRP41.019e-2143.45Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRP21.019e-2143.45Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_THERP1.331e-2140.61Ribose-5-phosphate isomerase A OS=Thermomicrobium ... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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