CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BOVIN (Ribose-5-phosphate isomerase (Fragment) OS=Bos taurus GN=RPIA PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 47/142 (33.10%), Postives = 74/142 (52.11%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGS-KLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGEN-GKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            EVD +LNL+KG GG L +EK+V   +  F+V+AD  K    LG      +P+EV+   +   +   + + ++ G   +LR   N   P +TDN N+I+D  F+  +         I  + GVV+ GLF++MA  V    + G
Sbjct:  118 EVDADLNLIKGGGGCLTQEKIVAGNASRFIVIADFRKDSKNLGDQWHKGIPIEVIPMAY---VPVSRTVTQKFGGVIELRMAVNKAGPVVTDNGNFILDWKFDR-VHKWSEVNIAIKMIPGVVDTGLFINMAERVYFGMQDG 255          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BLOFL (Ribose-5-phosphate isomerase A OS=Blochmannia floridanus GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLD-MATAVIIAGKTGVEV 659
            E+D  + ++KG GGAL +EK++  A+K F+ + D+SK V+ L G K  +PVEV+             + + L C   L E  NG   ITDN N I+D+Y    I D       I  + GVV  GLF    A   +I  + G+++
Sbjct:   86 EIDLHMQMIKGGGGALTKEKIIAFAAKKFICIVDDSKQVNIL-GRKGPIPVEVIPMARSV-------VSKSLICLGGLPEYRNG--VITDNGNSILDVY-NMNITDASLLEQRINNIPGVVSVGLFAQRKADIALIGTQKGIKI 218          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_ACTSZ (Ribose-5-phosphate isomerase A OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 47/144 (32.64%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLF-LDMATAVIIAGKTGVEV 659
            E++P+  ++KG G AL REK+V + +K+F+ + D SK V  L GS   +PVEV+         ++      LG   + R+G      +TDN N I+D++   PI +      E+  + GVV +G+F L+ A  VI+    G ++
Sbjct:   85 EINPQKMMIKGGGAALTREKIVASLTKNFICIVDSSKQVDVL-GSTFPLPVEVIPMARS----QVARKLVALGGSPEWRQG-----VVTDNGNVILDVH-NFPIMNPPEMEKELNNVAGVVTNGIFALNAANTVIVGTPEGAKI 217          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA1_YERPS (Ribose-5-phosphate isomerase A 1 OS=Yersinia pseudotuberculosis GN=rpiA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKF---NLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVEV 659
            E++ ++ ++KG G AL REK++ A ++ F+ +ADESK V  LG  K  +PVEV+     +    L++L  L             E  +  +TDN N I+D++    I D ++   +I  + GVV  GLF +    V + G   GV+V
Sbjct:   85 EINGQMQMIKGGGAALTREKIIAAIARKFICIADESKQVGVLG--KFPLPVEVIPMARSYVARELIKLGGL------------PEYRQNVLTDNGNVILDVH-NLSILDAIALENQINGIAGVVTVGLFANRGADVALIGTANGVKV 216          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA1_YERPE (Ribose-5-phosphate isomerase A 1 OS=Yersinia pestis GN=rpiA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKF---NLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVEV 659
            E++ ++ ++KG G AL REK++ A ++ F+ +ADESK V  LG  K  +PVEV+     +    L++L  L             E  +  +TDN N I+D++    I D ++   +I  + GVV  GLF +    V + G   GV+V
Sbjct:   85 EINGQMQMIKGGGAALTREKIIAAIARKFICIADESKQVGVLG--KFPLPVEVIPMARSYVARELIKLGGL------------PEYRQNVLTDNGNVILDVH-NLSILDAIALENQINGIAGVVTVGLFANRGADVALIGTANGVKV 216          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SODGM (Ribose-5-phosphate isomerase A OS=Sodalis glossinidius (strain morsitans) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 58/183 (31.69%), Postives = 91/183 (49.73%), Query Frame = 3
Query:  126 SNSRANTCTKPRLLEGMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKF---NLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDM-ATAVIIAGKTGVEV 659
            S+S A++     L  G+ L D     +L + +    E++  + ++KG G AL REK++ A ++ F+ +AD SKLV  LG     +PVEV+     +    LVR       LG     R+G      +TDN N I+D++    I D V+   +I  + GVV  GLF    A   +I  + GV++
Sbjct:   51 SSSEASSAKLQSL--GIPLFDLNEVDSLDIYVDGADEINGSMQMIKGGGAALTREKIIAAVARKFICIADSSKLVDVLG--TFPLPVEVIPMARAWVARELVR-------LGGAPVYRQG-----VVTDNGNIILDVH-NLAIMDAVALEEQINNIPGVVTVGLFARRGADVALIGSEQGVKI 216          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SHEPC (Ribose-5-phosphate isomerase A OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 54/173 (31.21%), Postives = 90/173 (52.02%), Query Frame = 3
Query:  126 SNSRANTCTKPRLLEGMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 641
            S+S A+T     L  G+ + D  S   L V +    E++  ++++KG G AL REK+V A ++ F+ + D +K V+ LG  +  +PVEV+     +   +L     +LG +   REG      +TDN N I+D+Y    I +     ++I ++ GVV +GLF      V++ G
Sbjct:   51 SSSEASTQKMKAL--GIPVYDLNSVDRLSVYVDGADEINDRMDMIKGGGAALTREKIVAAVAEKFICIVDNTKQVNILG--EFPLPVEVIPMARSYVARQLV----KLGGDPVYREG-----VVTDNGNVILDVY-NLKILNPKELESQINEIVGVVTNGLFAKRGADVLLVG 209          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PECCP (Ribose-5-phosphate isomerase A OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 641
            E++  + ++KG G AL REK++ A S+ F+ + D SK V  LG  K  +PVEV+     +    L     +LG +   R+G      +TDN N I+D++    I D ++    I  + GVV  GLF +    V + G
Sbjct:   85 EINGHMQMIKGGGAALTREKIISALSRQFICIVDASKQVDVLG--KFPLPVEVIPMARSYVARELV----KLGGQPVYRQG-----VVTDNGNVILDVH-NLNIMDAIAVENHINGIPGVVTVGLFANRGADVALVG 209          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_MARAV (Ribose-5-phosphate isomerase A OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 641
            E +  L L+KG GGAL REK+V A +K+F+ +ADESK V  LG  +  +PVEV+          +     +LG +   R+G     ++TDN N IID++    I   +    ++  + GVV +GLF      +++ G
Sbjct:   89 ETNESLELIKGGGGALTREKIVAAVAKTFICIADESKQVGILG--EFPLPVEVIPMARS----HVGREIVKLGGDPVYRDG-----FVTDNGNIIIDIH-NMDISRPLVVEEKLNNIVGVVTNGLFARRPADLLLLG 213          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BURCM (Ribose-5-phosphate isomerase A OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 52/143 (36.36%), Postives = 71/143 (49.65%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 656
            E+D    ++KG GGAL REK+V + + +FV +AD SK V  LG     +P+EVV          +      LG    LR  ++G PYITDN N IID+     I D      ++    GVV  GLF +    + + G   GVE
Sbjct:   89 EIDASGAMIKGGGGALTREKIVASVADTFVCIADASKRVPVLGA--FPLPIEVVPMA----RTAIGRRVTALGGVPVLRVTKDGAPYITDNGNEIIDVK-GLQIADPRGFEAQVNAWPGVVTVGLFAERGANLCLLGTPNGVE 224          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_BOVIN3.633e-1133.10Ribose-5-phosphate isomerase (Fragment) OS=Bos tau... [more]
RPIA_BLOFL3.633e-1134.72Ribose-5-phosphate isomerase A OS=Blochmannia flor... [more]
RPIA_ACTSZ3.633e-1132.64Ribose-5-phosphate isomerase A OS=Actinobacillus s... [more]
RPIA1_YERPS3.633e-1132.65Ribose-5-phosphate isomerase A 1 OS=Yersinia pseud... [more]
RPIA1_YERPE3.633e-1132.65Ribose-5-phosphate isomerase A 1 OS=Yersinia pesti... [more]
RPIA_SODGM4.745e-1131.69Ribose-5-phosphate isomerase A OS=Sodalis glossini... [more]
RPIA_SHEPC4.745e-1131.21Ribose-5-phosphate isomerase A OS=Shewanella putre... [more]
RPIA_PECCP4.745e-1132.85Ribose-5-phosphate isomerase A OS=Pectobacterium c... [more]
RPIA_MARAV4.745e-1134.31Ribose-5-phosphate isomerase A OS=Marinobacter aqu... [more]
RPIA_BURCM4.745e-1136.36Ribose-5-phosphate isomerase A OS=Burkholderia amb... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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