CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BURCH (Ribose-5-phosphate isomerase A OS=Burkholderia cenocepacia (strain HI2424) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 52/143 (36.36%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 656
            E+D    ++KG GGAL REK+V + + +FV +AD SK V  LG     +P+EVV          +      LG    LR  ++G PYITDN N IID+     I D      ++    GVV  GLF +    + + G + GVE
Sbjct:   89 EIDAGGAMIKGGGGALTREKIVASVADTFVCIADASKRVPVLGA--FPLPIEVVPMA----RTAIGRRVTALGGVPVLRVTKDGAPYITDNGNEIIDVK-GLQIADPRGFEAQVNAWPGVVTVGLFAERGANLCLLGTENGVE 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BURCC (Ribose-5-phosphate isomerase A OS=Burkholderia cenocepacia (strain MC0-3) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 52/143 (36.36%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 656
            E+D    ++KG GGAL REK+V + + +FV +AD SK V  LG     +P+EVV          +      LG    LR  ++G PYITDN N IID+     I D      ++    GVV  GLF +    + + G + GVE
Sbjct:   89 EIDAGGAMIKGGGGALTREKIVASVADTFVCIADASKRVPVLGA--FPLPIEVVPMA----RTAIGRRVTALGGVPVLRVTKDGAPYITDNGNEIIDVK-GLQIADPRGFEAQVNAWPGVVTVGLFAERGANLCLLGTENGVE 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BURCA (Ribose-5-phosphate isomerase A OS=Burkholderia cenocepacia (strain AU 1054) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 52/143 (36.36%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 656
            E+D    ++KG GGAL REK+V + + +FV +AD SK V  LG     +P+EVV          +      LG    LR  ++G PYITDN N IID+     I D      ++    GVV  GLF +    + + G + GVE
Sbjct:   89 EIDAGGAMIKGGGGALTREKIVASVADTFVCIADASKRVPVLGA--FPLPIEVVPMA----RTAIGRRVTALGGVPVLRVTKDGAPYITDNGNEIIDVK-GLQIADPRGFEAQVNAWPGVVTVGLFAERGANLCLLGTENGVE 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BURA4 (Ribose-5-phosphate isomerase A OS=Burkholderia ambifaria (strain MC40-6) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 53/143 (37.06%), Postives = 71/143 (49.65%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 656
            E+D    ++KG GGAL REK+V + + +FV +AD SK V  LG     +P+EVV          +      LG    LR  ++G PYITDN N IID+     I D      +I    GVV  GLF +    + + G   GVE
Sbjct:   89 EIDASGAMIKGGGGALTREKIVASVADTFVCIADGSKRVPVLGA--FPLPIEVVPMA----RTAIGRRVTALGGVPVLRVTQDGAPYITDNGNEIIDVK-GLQIVDPRGFEAQINAWPGVVTVGLFAERGANLCLLGTPNGVE 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BAUCH (Ribose-5-phosphate isomerase A OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 49/147 (33.33%), Postives = 74/147 (50.34%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLD-MATAVIIAGKTGVEVKSK 668
            E++  + ++KG G AL REK++ AA+  F+ +AD SK V  LG   L + V  +   W       ++L    G   K R+G      ITDN N I+D+Y    I D ++    I  + GVV  GLF +  A   +I+   G+E  S+
Sbjct:   85 EINSNMQMIKGGGAALTREKVLAAAANKFICIADTSKQVDILGNFPLPIEVIPMAHAWV-----ARELVHLTGGLPKYRQG-----VITDNGNIILDIY-NLKILDAIALEKIINNIPGVVTVGLFANRCADIALISSDLGIEEISR 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SHEB9 (Ribose-5-phosphate isomerase A OS=Shewanella baltica (strain OS195) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 54/173 (31.21%), Postives = 89/173 (51.45%), Query Frame = 3
Query:  126 SNSRANTCTKPRLLEGMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 641
            S+S A+T     L  G+ + D  S   L V +    E++  ++++KG G AL REK+V A ++ F+ + D +K V  LG  +  +PVEV+     +   +L     +LG +   REG      +TDN N I+D+Y    I +     ++I ++ GVV +GLF      V++ G
Sbjct:   51 SSSEASTQKMKAL--GIPVYDLNSVDRLSVYVDGADEINDRMDMIKGGGAALTREKIVAAVAEKFICIVDNTKQVDILG--EFPLPVEVIPMARSYVARQLV----KLGGDPVYREG-----VVTDNGNVILDVY-NLKILNPKELESQINEIVGVVTNGLFAKRGADVLLVG 209          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SHEB8 (Ribose-5-phosphate isomerase A OS=Shewanella baltica (strain OS185) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 54/173 (31.21%), Postives = 89/173 (51.45%), Query Frame = 3
Query:  126 SNSRANTCTKPRLLEGMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 641
            S+S A+T     L  G+ + D  S   L V +    E++  ++++KG G AL REK+V A ++ F+ + D +K V  LG  +  +PVEV+     +   +L     +LG +   REG      +TDN N I+D+Y    I +     ++I ++ GVV +GLF      V++ G
Sbjct:   51 SSSEASTQKMKAL--GIPVYDLNSVDRLSVYVDGADEINDHMDMIKGGGAALTREKIVAAVAEKFICIVDNTKQVDILG--EFPLPVEVIPMARSYVARQLV----KLGGDPVYREG-----VVTDNGNVILDVY-NLKILNPKELESQINEIVGVVTNGLFAKRGADVLLVG 209          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SHEB5 (Ribose-5-phosphate isomerase A OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 54/173 (31.21%), Postives = 89/173 (51.45%), Query Frame = 3
Query:  126 SNSRANTCTKPRLLEGMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 641
            S+S A+T     L  G+ + D  S   L V +    E++  ++++KG G AL REK+V A ++ F+ + D +K V  LG  +  +PVEV+     +   +L     +LG +   REG      +TDN N I+D+Y    I +     ++I ++ GVV +GLF      V++ G
Sbjct:   51 SSSEASTQKMKAL--GIPVYDLNSVDRLSVYVDGADEINDRMDMIKGGGAALTREKIVAAVAEKFICIVDNTKQVDILG--EFPLPVEVIPMARSYVARQLV----KLGGDPVYREG-----VVTDNGNVILDVY-NLKILNPKELESQINEIVGVVTNGLFAKRGADVLLVG 209          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SHEB2 (Ribose-5-phosphate isomerase A OS=Shewanella baltica (strain OS223) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 54/173 (31.21%), Postives = 89/173 (51.45%), Query Frame = 3
Query:  126 SNSRANTCTKPRLLEGMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 641
            S+S A+T     L  G+ + D  S   L V +    E++  ++++KG G AL REK+V A ++ F+ + D +K V  LG  +  +PVEV+     +   +L     +LG +   REG      +TDN N I+D+Y    I +     ++I ++ GVV +GLF      V++ G
Sbjct:   51 SSSEASTQKMKAL--GIPVYDLNSVDRLSVYVDGADEINDRMDMIKGGGAALTREKIVAAVAEKFICIVDNTKQVDILG--EFPLPVEVIPMARSYVARQLV----KLGGDPVYREG-----VVTDNGNVILDVY-NLKILNPKELESQINEIVGVVTNGLFAKRGADVLLVG 209          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_EXIS2 (Ribose-5-phosphate isomerase A OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 44/128 (34.38%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  225 IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLF 608
            I ++DP   ++KG GGAL REK+V   S+  + +AD SK V  L G    +PVE+  F   +    ++   R+   +  LRE  +G+P++TD  + I+D+  E  ++D      E+  L GV+E G F
Sbjct:   84 IDQIDPRFRVLKGGGGALFREKVVALMSREILYLADASKFVHHLTG---PLPVEIDAFARPY----VERYLRDKQLDVTLRE-HDGQPFVTDGGHLILDVDLER-VQDVRHFAQELKSLTGVLETGYF 202          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_BURCH4.745e-1136.36Ribose-5-phosphate isomerase A OS=Burkholderia cen... [more]
RPIA_BURCC4.745e-1136.36Ribose-5-phosphate isomerase A OS=Burkholderia cen... [more]
RPIA_BURCA4.745e-1136.36Ribose-5-phosphate isomerase A OS=Burkholderia cen... [more]
RPIA_BURA44.745e-1137.06Ribose-5-phosphate isomerase A OS=Burkholderia amb... [more]
RPIA_BAUCH4.745e-1133.33Ribose-5-phosphate isomerase A OS=Baumannia cicade... [more]
RPIA_SHEB96.198e-1131.21Ribose-5-phosphate isomerase A OS=Shewanella balti... [more]
RPIA_SHEB86.198e-1131.21Ribose-5-phosphate isomerase A OS=Shewanella balti... [more]
RPIA_SHEB56.198e-1131.21Ribose-5-phosphate isomerase A OS=Shewanella balti... [more]
RPIA_SHEB26.198e-1131.21Ribose-5-phosphate isomerase A OS=Shewanella balti... [more]
RPIA_EXIS26.198e-1134.38Ribose-5-phosphate isomerase A OS=Exiguobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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