CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_CRYNE (Ribose-5-phosphate isomerase OS=Cryptococcus neoformans GN=RKI1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 54/152 (35.53%), Postives = 74/152 (48.68%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGS-KLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENG----------KPYITDNFNYIIDLYF-ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            EVD ELN +KG G   LREK++  A+ ++++VAD  K    LG S    +P+EVV F +   L  L      +G    L  G+ G           P ++DN N+IID  F E  ++       +I  L GVVE GLF  MA A     + G
Sbjct:  141 EVDNELNSIKGGGACQLREKVLAEAADTWIIVADYRKNSEVLGTSWTKGIPIEVVPFAYAKVLTNL----AHMGSPHVLPNGQPGLSLRMGKMKAGPVVSDNGNFIIDAPFAEELMRQPEELLHKIKMLTGVVEVGLFCGMAKAAYFGNEDG 288          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SALAR (Ribose-5-phosphate isomerase A OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  171 GMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 641
            G+H+ D     +L + +    E++  + ++KG G AL REK++ + ++ F+ +AD SK V  LG  K  +PVEV+         +L     +LG   + R+G      +TDN N I+D+Y    I D ++    I  + GVV  GLF +    V + G
Sbjct:   64 GIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILG--KFPLPVEVIPMARSAVARQLV----KLGGRPEYRQG-----VVTDNGNVILDVY-GMEILDPIALENAINAIPGVVTVGLFANRGADVALIG 209          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PHOLL (Ribose-5-phosphate isomerase A OS=Photorhabdus luminescens subsp. laumondii GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGK-TGVE 656
            E++  + ++KG G AL REK++ A +K FV + D SK V  LG  K  +PVEV+     +    L     +LG   K R+       +TDN N I+D++    I D      +I ++ GVV  GLF +    +++ G   GVE
Sbjct:   85 EINGNMQMIKGGGAALTREKIIAAIAKKFVCIVDASKKVEVLG--KFPLPVEVIPMARAYVARELV----KLGGVPKYRQN-----VVTDNGNVILDVH-NLAILDPAELENKINRISGVVTVGLFANRGADIVLMGTLDGVE 215          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_META3 (Ribose-5-phosphate isomerase A OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 43/135 (31.85%), Postives = 75/135 (55.56%), Query Frame = 3
Query:  231 EVDPE-LNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVI 632
            EV+ E LN++KG GG   +EK+++  +K  +++ DESKLV  L G    +P+EV+ F +   L  L  L        ++ + + G P ITDN N IID++ +  + +      ++  + GVVE+G+F  +   ++
Sbjct:   95 EVNKETLNVIKGGGGCHTQEKIIDYCAKELIIIVDESKLVDSL-GENTPVPLEVLPFAYSSVLNEL--LKMNSAPSIRMADKKMG-PVITDNGNMIIDVFID--LNNPEEVEKQLNNIPGVVENGIFTKVDKVIV 223          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_MANSM (Ribose-5-phosphate isomerase A OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLF-LDMATAVIIAGKTGVEV 659
            E++P+  ++KG G AL REK+V + +K+F+ + D SK V  L GS   +PVEV+         ++      LG   + REG      ITDN N I+D++    I + +    E+  + GVV +G+F L+ A  VI+    G ++
Sbjct:   85 EINPQKMMIKGGGAALTREKIVSSLAKNFICIVDSSKQVDIL-GSTFPLPVEVIPMARS----QVARKLVALGGSPEWREG-----VITDNGNVILDVH-NFIIMNPIEMEKELNNVAGVVTNGIFALNAAHTVIVGTPDGAKI 217          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_HAEI8 (Ribose-5-phosphate isomerase A OS=Haemophilus influenzae (strain 86-028NP) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 641
            E++P+  ++KG G AL REK+V A +K F+ + D SK V  L GS   +PVEV+         ++      LG   + REG      +TDN N I+D++    I + V    E+  + GVV +G+F      V+I G
Sbjct:   85 EINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVL-GSTFPLPVEVIPMARS----QVGRKLVALGGAPEYREG-----VVTDNGNVILDVH-NFSILNPVEMEKELNNVAGVVTNGIFALRGADVVIVG 210          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_CHLFF (Ribose-5-phosphate isomerase A OS=Chlamydophila felis (strain Fe/C-56) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 40/127 (31.50%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFL 611
            E+DP+L ++KG GGA+ REK++  +S+  +++ADESK V  LG  K  +PVE+  +     +  L+     +G    LR+   G  +IT+N NYI D++             ++ ++ G++E G  +
Sbjct:   91 EIDPQLRMIKGGGGAIFREKILLQSSQRRLILADESKSVKVLG--KFGLPVEISPYGRSSIIAALE----AIGYLGNLRKNSRGGFFITNNGNYIYDIHTPNIYPHPEEDLLKLLQIHGIIEVGFVI 211          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BURVG (Ribose-5-phosphate isomerase A OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 3
Query:  171 GMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 656
            G+ + D     AL V +    E+D    ++KG GGAL REK+V + + +FV +AD SK V  LG     +P+EVV          +      LG    LR  ++G PYITDN N IID+     I +  +   ++    GVV  GLF +    + + G + GVE
Sbjct:   68 GIKVFDLNEIDALQVYVDGADEIDASGAMIKGGGGALTREKIVASVADTFVCIADGSKRVPVLGA--FPLPIEVVPMA----RTAIGRRVAALGGVPVLRVTKDGAPYITDNGNEIIDVK-GLQIAEPRAFEAKVNAWPGVVTVGLFAERGANLCLLGTENGVE 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BURCJ (Ribose-5-phosphate isomerase A OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 57/164 (34.76%), Postives = 79/164 (48.17%), Query Frame = 3
Query:  171 GMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 656
            G+ + D     AL V +    E+D    ++KG GGAL REK+V + + +FV +AD SK V  LG     +P+EVV          +      LG    LR  ++G PYITDN N IID+     I D       +    GVV  GLF +    + + G + GVE
Sbjct:   68 GIKVFDLNEIDALQVYVDGADEIDAGGAMIKGGGGALTREKIVASVADTFVCIADGSKRVPVLGA--FPLPIEVVPMA----RTAIGRRVTALGGVPVLRVTKDGAPYITDNGNEIIDVK-GLQIADPRGFEARVNAWPGVVTVGLFAERGANLCLLGTENGVE 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_AERS4 (Ribose-5-phosphate isomerase A OS=Aeromonas salmonicida (strain A449) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 56/174 (32.18%), Postives = 90/174 (51.72%), Query Frame = 3
Query:  126 SNSRANTCTKPRLLE-GMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 641
            S+S A+T    RL E G+++ D     AL V +    E++   +++KG G AL REK+V A +  F+ + D +K V  LG  +  +PVEV+    ++    +    R+LG   + REG      +TDN N I+D+     IKD  +   ++  + GVV +GLF      V++ G
Sbjct:   51 SSSIAST---ERLKEFGINVYDLNDIDALSVYVDGADEINASRDMIKGGGAALTREKIVAAVADKFICIIDNTKTVDVLG--QFPLPVEVIPMAREY----VAREIRKLGGNPEWREG-----VVTDNGNIILDVK-GMAIKDAKALEVQLNGIVGVVTNGLFAHRGADVVLIG 209          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_CRYNE6.198e-1135.53Ribose-5-phosphate isomerase OS=Cryptococcus neofo... [more]
RPIA_SALAR8.094e-1131.01Ribose-5-phosphate isomerase A OS=Salmonella arizo... [more]
RPIA_PHOLL8.094e-1133.57Ribose-5-phosphate isomerase A OS=Photorhabdus lum... [more]
RPIA_META38.094e-1131.85Ribose-5-phosphate isomerase A OS=Methanococcus ae... [more]
RPIA_MANSM8.094e-1133.33Ribose-5-phosphate isomerase A OS=Mannheimia succi... [more]
RPIA_HAEI88.094e-1134.31Ribose-5-phosphate isomerase A OS=Haemophilus infl... [more]
RPIA_CHLFF8.094e-1131.50Ribose-5-phosphate isomerase A OS=Chlamydophila fe... [more]
RPIA_BURVG8.094e-1134.15Ribose-5-phosphate isomerase A OS=Burkholderia vie... [more]
RPIA_BURCJ8.094e-1134.76Ribose-5-phosphate isomerase A OS=Burkholderia cep... [more]
RPIA_AERS48.094e-1132.18Ribose-5-phosphate isomerase A OS=Aeromonas salmon... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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