CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHIL3 (Ribose-5-phosphate isomerase A OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.331e-21
Identity = 64/142 (45.07%), Postives = 87/142 (61.27%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            EVD  L L+KG GGALLREK+V AAS+  +V+ADESKLV  LG    A+P+EV  F      + ++ +   LG   E  LR+  +G+ + TD  ++IID  F   I D  +  +E+  + GVVEHGLF++MA   IIAG  G
Sbjct:   87 EVDQALRLIKGGGGALLREKIVAAASERMIVIADESKLVETLGA--FALPIEVNPFGLVSTRIAIEKVAARLGLSGELDLRQSGDGE-FTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMAALAIIAGPAG 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPB (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain BisB18) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 57/145 (39.31%), Postives = 88/145 (60.69%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            E++  LNL+KG GGALLREK+V AAS   +V+ADESKLV+ LG  +  +P+EV  F     L  +++   E G      LR+G +G  ++TD  ++I+D      I D  S   ++  + GVVE+GLF+ +A+  ++AG  G+ +
Sbjct:   87 EINAALNLIKGGGGALLREKIVAAASDRMIVIADESKLVANLG--RFPLPIEVNSFGLAATLRAIEEACAECGVFGPLSLRKGSDGHAFVTDGGHWIVDAQLGR-IPDAPSLADQLNAIPGVVENGLFIGLASMAVLAGPNGIRI 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PYRAB (Ribose-5-phosphate isomerase A OS=Pyrococcus abyssi GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGEN-GKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            EVDP LNL+KGRG AL  EK++E+ +  F+V+ DE KLV  L   K+ +P+EV+   W+  +V    +F     EAKLR G N   P ITDN N+IID  F   I D +    E+  + GVVE+G+F D+A  VI+  K GV+
Sbjct:   89 EVDPNLNLIKGRGAALTMEKIIESRAGMFIVLVDERKLVDYL-CQKMPVPIEVIPQAWR-AIVEELSIF---NAEAKLRMGVNKDGPVITDNGNFIIDAKFPR-IDDPLDMEIELNTIPGVVENGIFADIADIVIVGTKEGVK 225          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRGC (Ribose-5-phosphate isomerase A OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 63/143 (44.06%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVDP  N +KG GGALL EK+V   +KS++ V DESKLV  LG  KL  PVEVVQ    +   ++   F   G +   R+ ++G+ ++TD  N+IIDL     I++ +    E+  + G+VEHGLF  M   VI+AGK GV+V
Sbjct:   86 EVDPNFNGIKGGGGALLMEKVVATPTKSYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRRFERAGYKPAFRQ-KDGQRFVTDMKNFIIDLDLGV-IENPIEFARELDHIVGIVEHGLFNQMVDKVIVAGKAGVQV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_AGRRK (Ribose-5-phosphate isomerase A OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 62/142 (43.66%), Postives = 87/142 (61.27%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEA--KLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            EVD  L L+KG GGALLREK+V A+S+  +V+ADESK+V  LG    A+P+EV  F      ++++     LG      LR+ E+G  ++TD  ++IID  F   I D  +    +  + GVVEHGLF++MAT  IIAG +G
Sbjct:   87 EVDGALRLIKGGGGALLREKIVAASSQRMIVIADESKVVQTLGA--FALPIEVNPFGLVSTRIQIEKTAARLGLSGALNLRQSEDGN-FMTDGGHFIIDASFGR-IPDAEALSIALNSIPGVVEHGLFINMATLAIIAGPSG 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_NITWN (Ribose-5-phosphate isomerase A OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpiA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 56/145 (38.62%), Postives = 87/145 (60.00%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKL--REGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            E+DP+LNL KG GGALLREK+V AAS   +V+ADE+K V+GLG  +  +P+EV+ F        + ++F + G   +L  R+  +G  ++TD  ++I D +    I D       +  + GVVEHGLF+ +A   ++AG  G+ +
Sbjct:   87 EIDPDLNLTKGGGGALLREKIVAAASDRMIVIADETKWVAGLG--RFPLPIEVIPFGLAATRRAITEVFAKAGVSGELAVRKRPDGHAFVTDGGHWIFDAHL-GQIPDASYLAGLLNPIPGVVEHGLFIGLARVAMLAGAEGIRI 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BRUME (Ribose-5-phosphate isomerase A OS=Brucella melitensis GN=rpiA PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 60/147 (40.82%), Postives = 90/147 (61.22%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLR-EGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVD EL+L+KG GGALLREK+V AAS S +V+AD+SK+V  LG  +  +P+EV +F     +  ++    + G    L    ++G P++TD  +YI+D  F   I D  +    +  + GVVEHGLF+++A A IIAG  G+   ++
Sbjct:   88 EVDGELSLIKGGGGALLREKIVAAASDSMIVIADQSKVVETLG--RFPLPIEVNRFGLGATIRAIEAAAVKCGLAGPLNLRLKDGSPFLTDGGHYIVDASFGR-IPDPKTLSDALFAIPGVVEHGLFIELARAAIIAGTDGIRTMNR 231          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_ROSCS (Ribose-5-phosphate isomerase A OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpiA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.058e-21
Identity = 63/141 (44.68%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653
            E+DP L L+KG GGA+LREK+V A++  FVV+A  SK V  L G +  +PVEVV F     + RL      LG E  LR   +G P++TD  N I+D +F   I D  +    I  + GVV HGLFL MA+  +IAG  G+
Sbjct:   89 EIDPHLRLIKGLGGAMLREKIVAASAARFVVMASVSKRVERL-GERSPLPVEVVTFGMPLCIRRL----AALGGEPVLRCDHSGAPFVTDEGNLILDCHFGV-IADPEALAAAICAIPGVVAHGLFLGMASLAVIAGPDGI 223          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHILO (Ribose-5-phosphate isomerase A OS=Rhizobium loti GN=rpiA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.058e-21
Identity = 58/143 (40.56%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLR-EGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            EVDPEL L+KG GGALLREK+V AAS+  +V+AD SK+V  LG  +  +P+EV QF  +   + +     +LG    +      G+ ++TD  ++I+D  F   I D  +    +  + GVVEHGLF+ +A+  IIAG  G++
Sbjct:   87 EVDPELTLIKGGGGALLREKIVAAASQRMIVIADRSKMVETLG--RFPLPIEVNQFGLRATEIAIAKTAADLGLSGPITLRMTGGQAFVTDGGHFILDASFGR-IPDTRALSNALHAIPGVVEHGLFIGLASTAIIAGGDGIQ 226          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PYRFU (Ribose-5-phosphate isomerase A OS=Pyrococcus furiosus GN=rpiA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.058e-21
Identity = 65/168 (38.69%), Postives = 97/168 (57.74%), Query Frame = 3
Query:  159 RLLEGMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            R+  G+ +L      A+ +A+    EVDP LNL+KGRG AL  EK++E  + +F+V+ DESKLV  L   K+ +P+EV+   WK  L  L         +A+LR G +   P +T+N N+IID  F   I D +    E+  + GVVE+G+F D+A  V++  K GV+
Sbjct:   64 RMESGVPVLSLDQVDAIDIAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDESKLVDYL-CQKMPVPIEVIPAAWKAILEELS----IFNAKAELRMGVKKDGPVVTENGNFIIDAKFPR-IDDPLDMEIELNTIPGVVENGIFADIADIVLVGTKEGVK 225          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_RHIL31.331e-2145.07Ribose-5-phosphate isomerase A OS=Rhizobium legumi... [more]
RPIA_RHOPB1.739e-2139.31Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_PYRAB1.739e-2144.76Ribose-5-phosphate isomerase A OS=Pyrococcus abyss... [more]
RPIA_STRGC2.965e-2144.06Ribose-5-phosphate isomerase A OS=Streptococcus go... [more]
RPIA_AGRRK2.965e-2143.66Ribose-5-phosphate isomerase A OS=Agrobacterium ra... [more]
RPIA_NITWN3.873e-2138.62Ribose-5-phosphate isomerase A OS=Nitrobacter wino... [more]
RPIA_BRUME3.873e-2140.82Ribose-5-phosphate isomerase A OS=Brucella meliten... [more]
RPIA_ROSCS5.058e-2144.68Ribose-5-phosphate isomerase A OS=Roseiflexus cast... [more]
RPIA_RHILO5.058e-2140.56Ribose-5-phosphate isomerase A OS=Rhizobium loti G... [more]
RPIA_PYRFU5.058e-2138.69Ribose-5-phosphate isomerase A OS=Pyrococcus furio... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
back to top