CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_GLOVI (Ribose-5-phosphate isomerase A OS=Gloeobacter violaceus GN=rpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.606e-21
Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  243 ELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EL L+KG GGALLREK+V AAS+  +++ D +KLV  L GS   +PVEV  F W+     L+     LG E  LR  ++G+ ++TD  +YI+D  F  PI         I ++ GVVE GLF+ MA+AVI+A + G+EV
Sbjct:   92 ELALIKGLGGALLREKIVAAASERLIIIVDATKLVEQL-GSHGPLPVEVAPFGWQATARALE----RLGAEVNLR-AQHGQAFLTDGGHYILDCRF-GPIARPAELEAAIDRIPGVVESGLFVGMASAVIVADEGGIEV 223          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BRUSU (Ribose-5-phosphate isomerase A OS=Brucella suis GN=rpiA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 60/147 (40.82%), Postives = 89/147 (60.54%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLR-EGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVD EL+L+KG GGALLREK+V AAS S +V+AD+SK+V  LG  +  +P+EV +F     +  ++    + G    L    ++G P++TD  +YI+D  F   I D  +    +  + GVVEHGLF+ +A A IIAG  G+   ++
Sbjct:   88 EVDGELSLIKGGGGALLREKIVAAASDSMIVIADQSKVVETLG--RFPLPIEVNRFGLGATIRAIEAAAVKCGLAGPLNLRLKDGSPFLTDGGHYIVDASFGR-IPDPKTLSDALFAIPGVVEHGLFIGLARAAIIAGTDGIRTMNR 231          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_ROSS1 (Ribose-5-phosphate isomerase A OS=Roseiflexus sp. (strain RS-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 62/141 (43.97%), Postives = 82/141 (58.16%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653
            E+DP+L L+KG GGA+LREK+V A++  FVV+A  SK V  L G +  +PVEVV F       RL    + LG    LR   +G P++TD  N I+D  F   I D  +    I  + GVV HGLFL MA+  +IAG  G+
Sbjct:   89 EIDPQLRLIKGLGGAMLREKIVAASAARFVVMAAVSKCVERL-GERSPLPVEVVAFGLPLCARRL----KALGGAPALRRDRSGAPFVTDEGNLILDCNFGI-IADPEALAASICAIPGVVAHGLFLGMASLAVIAGPDGI 223          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRMU (Ribose-5-phosphate isomerase A OS=Streptococcus mutans GN=rpiA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 64/143 (44.76%), Postives = 84/143 (58.74%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVDP  N +KG GGALL EK+V   +K ++ V DESK+V  LG  +L  PVEVVQ    +   RL   F + G +   RE  +G  ++TD  N+IIDL   + I D ++ G  +    GVVEHGLF  M   VI+AGK GV +
Sbjct:   86 EVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLGAFRL--PVEVVQ----YGAERLFREFEKKGYKPSFRE-YDGVRFVTDMKNFIIDLDLGS-IPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGVRI 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PYRHO (Ribose-5-phosphate isomerase A OS=Pyrococcus horikoshii GN=rpiA PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 60/143 (41.96%), Postives = 85/143 (59.44%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGEN-GKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            EVDP LNL+KGRG AL  EK++E  + +F+V+ DE KLV  L   K+ +P+EV+   WK  +  L         +A+LR G N   P ITDN N+IID  F   I D +    E+  + GV+E+G+F D+A  VI+  + GV+
Sbjct:   89 EVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYL-CQKMPVPIEVIPQAWKAIIEELS----IFNAKAELRMGVNKDGPVITDNGNFIIDAKFPR-IDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREGVK 225          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SPHAL (Ribose-5-phosphate isomerase A OS=Sphingopyxis alaskensis GN=rpiA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 63/147 (42.86%), Postives = 85/147 (57.82%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYF-ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            E+D     +KG GGALLREK+ E+AS   +++AD SKLV+ LG  K  +PVEVV F  +F   RL      LG    +RE   G P++TD  NYI+D    E P    ++A   I  + GV+EHGLFLD    ++IA    VEV+ +
Sbjct:   88 EIDDRFQAIKGGGGALLREKITESASTRVIIIADSSKLVAQLG--KFPLPVEVVPFATEFVRARLS----ALGARVTVREA-GGTPFLTDQGNYILDAALDEIPRPREIAAA--ITTIPGVLEHGLFLDEIDTIMIARGDMVEVRHR 225          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHISN (Ribose-5-phosphate isomerase A OS=Rhizobium sp. (strain NGR234) GN=rpiA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 64/143 (44.76%), Postives = 89/143 (62.24%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYF-ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            EVD +L L+KG GGALLREK+V +AS+  +V+ADESK+V  LG  KL  P+EV QF      + ++ +   LG   +  LR   +G P++TD  + I+D  F   P  + ++AG  +  + GVVEHGLFL MA+  IIAG  G
Sbjct:   87 EVDGKLRLIKGGGGALLREKIVASASERMIVIADESKVVDVLGAFKL--PIEVNQFGLTTTRLAIEKVAARLGLTGDIGLRASGDG-PFMTDGGHLILDASFGRIPDAEALAAG--LNAIPGVVEHGLFLGMASLAIIAGPEG 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_CHLAD (Ribose-5-phosphate isomerase A OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rpiA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 59/141 (41.84%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653
            EVDP + L+KG GGALLREKMV  AS+   ++ DESKL   L G++ A+P+EVV F ++     L       G   +LR   +G+P+ TD  + I+D +   PI D       +    G+VEHGLF+ +AT + +AG TGV
Sbjct:   90 EVDPYMALIKGGGGALLREKMVAQASRRVAIIVDESKLSPAL-GTRFALPIEVVDFGYRATARWL----AAQGGSVRLRLRSDGQPFRTDQGHLILD-WACGPIADPTVLADRLAARAGIVEHGLFIGLATDLFVAGATGV 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PARL1 (Ribose-5-phosphate isomerase A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpiA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKL--REGENGKPYITDNFNYIIDLYF-ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            E+D +L L+KG GGALLREK+V  AS   +V+AD SKLV  LG     +PVEV+ F       ++ ++    GC  K+  R  E G+P+ TD+ N+I D  F   P  DG+SA   + ++ GVV++GLF+ +A   I+    G ++
Sbjct:   87 ELDGKLRLIKGGGGALLREKIVATASDRMIVIADASKLVKTLG--SFPLPVEVIPFGSAVTARKIAEVASAHGCTGKMSRRADEYGEPFFTDSENFIYDCAFGSIPDPDGLSAA--LNRIPGVVDNGLFIGIAAMAIVGTDKGTDI 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_GLUOX (Ribose-5-phosphate isomerase A OS=Gluconobacter oxydans GN=rpiA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 69/170 (40.59%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  162 LLEGMHLLDKRSTRALPVALM-IHEVDP-ELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEA---KLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            L  G+ L D  + R + +A+    EV    LNL+KG GGALLREK+V  A+K FVV+ D +K V  L G +  +PVEV+ F W+    RL        C A   K R    G  ++TD  N I+D +F  PI+       +I ++ GVVEHG+FL+MA+ V++A   GVE
Sbjct:   66 LKAGIPLTDFSAHRRIDIAIDGADEVQRGSLNLIKGLGGALLREKIVAQAAKRFVVIVDGTKPVD-LLGERAPVPVEVISFGWECTAERL------AACGARGVKPRTDRAGSLFVTDTGNMILDCHF-GPIEKPEELAEKIDRIVGVVEHGMFLNMASEVLVATPDGVE 227          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_GLOVI6.606e-2144.60Ribose-5-phosphate isomerase A OS=Gloeobacter viol... [more]
RPIA_BRUSU8.628e-2140.82Ribose-5-phosphate isomerase A OS=Brucella suis GN... [more]
RPIA_ROSS11.922e-2043.97Ribose-5-phosphate isomerase A OS=Roseiflexus sp. ... [more]
RPIA_STRMU2.510e-2044.76Ribose-5-phosphate isomerase A OS=Streptococcus mu... [more]
RPIA_PYRHO2.510e-2041.96Ribose-5-phosphate isomerase A OS=Pyrococcus horik... [more]
RPIA_SPHAL3.279e-2042.86Ribose-5-phosphate isomerase A OS=Sphingopyxis ala... [more]
RPIA_RHISN3.279e-2044.76Ribose-5-phosphate isomerase A OS=Rhizobium sp. (s... [more]
RPIA_CHLAD3.279e-2041.84Ribose-5-phosphate isomerase A OS=Chloroflexus agg... [more]
RPIA_PARL14.282e-2039.73Ribose-5-phosphate isomerase A OS=Parvibaculum lav... [more]
RPIA_GLUOX4.282e-2040.59Ribose-5-phosphate isomerase A OS=Gluconobacter ox... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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