CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_OLICO (Ribose-5-phosphate isomerase A OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rpiA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 57/145 (39.31%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            E+ P L+++KG GGALLREK+V AAS   VV++D+SK V  LG  +  +PVEV+ F        L   F E G   E  LR+G +G  ++TD  ++I+D +    I +       +  + GVVEHGLF+ +A   I+AG  G+ +
Sbjct:   87 EIAPSLDVIKGGGGALLREKIVAAASTRMVVISDDSKWVETLG--RFPLPVEVIPFGLGATRRALATAFAEAGVTGEITLRQGPDGHAFVTDGGHWILDAHLGR-IPEPPRLAALLSAIPGVVEHGLFIGLAKTAILAGSQGIRI 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BRAJA (Ribose-5-phosphate isomerase A OS=Bradyrhizobium japonicum GN=rpiA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEA-----KLREGE-NGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            E+DPELNL+KG GGALLREK+V AAS   +V+AD++K V  LG  +  +P+EV+ F        ++  F + G        K + G+ +G  ++TD  ++I+D      I D  S    +  + GVVEHGLF+ +A++ ++AG  G+ V
Sbjct:   87 EIDPELNLIKGGGGALLREKIVAAASDRMIVIADDTKWVPTLG--RFPLPIEVIPFGLGATRRAIETAFAQCGVSGQMAVRKAKGGDKDGHVFVTDGGHWILDAQLGR-IVDPPSLAKALSAIPGVVEHGLFIGLASSAVLAGGEGIRV 232          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRSV (Ribose-5-phosphate isomerase A OS=Streptococcus sanguinis (strain SK36) GN=rpiA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 62/143 (43.36%), Postives = 85/143 (59.44%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD   N +KG GGALL EK+V   +K ++ V DESK+V  LG  KL  PVEVVQ    +   +L   F   G +   RE ++ + ++TD  N+IIDL     I++ V    E+  + GVVEHGLF  M   VI+AGK+G++V
Sbjct:   86 EVDSAFNGIKGGGGALLMEKVVAVPTKHYIWVVDESKMVEKLGAFKL--PVEVVQ----YGAEQLFRRFERAGYKPAFREKDDQR-FVTDMQNFIIDLDLGV-IENSVEFAQELDHVVGVVEHGLFNQMVDKVIVAGKSGLQV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STAAW (Ribose-5-phosphate isomerase A OS=Staphylococcus aureus (strain MW2) GN=rpiA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVDP LN++KG GGAL REK+++  +  FVVV DE+K+V  L G    +PVEV +F W ++++R  + + ++  E ++ E      +ITDN NYI+D      I D       +  L GV E G FLDMA  VI+  + GV++  K
Sbjct:   89 EVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYL-GETFKLPVEVDKFNW-YHILRKIESYADIKVERRVNE---DVAFITDNGNYILDCKLPKGI-DPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STAAS (Ribose-5-phosphate isomerase A OS=Staphylococcus aureus (strain MSSA476) GN=rpiA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVDP LN++KG GGAL REK+++  +  FVVV DE+K+V  L G    +PVEV +F W ++++R  + + ++  E ++ E      +ITDN NYI+D      I D       +  L GV E G FLDMA  VI+  + GV++  K
Sbjct:   89 EVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYL-GETFKLPVEVDKFNW-YHILRKIESYADIKVERRVNE---DVAFITDNGNYILDCKLPKGI-DPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STAAR (Ribose-5-phosphate isomerase A OS=Staphylococcus aureus (strain MRSA252) GN=rpiA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVDP LN++KG GGAL REK+++  +  FVVV DE+K+V  L G    +PVEV +F W ++++R  + + ++  E ++ E      +ITDN NYI+D      I D       +  L GV E G FLDMA  VI+  + GV++  K
Sbjct:   89 EVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKMVQYL-GETFKLPVEVDKFNW-YHILRKIESYADIKVERRVNE---DVAFITDNGNYILDCKLPKGI-DPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STAAN (Ribose-5-phosphate isomerase A OS=Staphylococcus aureus (strain N315) GN=rpiA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVDP LN++KG GGAL REK+++  +  FVVV DE+K+V  L G    +PVEV +F W ++++R  + + ++  E ++ E      +ITDN NYI+D      I D       +  L GV E G FLDMA  VI+  + GV++  K
Sbjct:   89 EVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYL-GETFKLPVEVDKFNW-YHILRKIESYADIKVERRVNE---DVAFITDNGNYILDCKLPKGI-DPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STAAM (Ribose-5-phosphate isomerase A OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpiA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVDP LN++KG GGAL REK+++  +  FVVV DE+K+V  L G    +PVEV +F W ++++R  + + ++  E ++ E      +ITDN NYI+D      I D       +  L GV E G FLDMA  VI+  + GV++  K
Sbjct:   89 EVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYL-GETFKLPVEVDKFNW-YHILRKIESYADIKVERRVNE---DVAFITDNGNYILDCKLPKGI-DPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_KORCO (Ribose-5-phosphate isomerase A OS=Korarchaeum cryptofilum (strain OPF8) GN=rpiA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 59/143 (41.26%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            E+D  LNL+KG GGALLREK++   S ++V++AD +KLV  L  SK A+PVEV+ +   +    L +L +   C+A++R  ++  P+ITDN N I+D+    P++D  S  +E+  + GVVE G+F+ +A  V+IA  + V+V
Sbjct:   84 EIDSNLNLLKGGGGALLREKVLAYNSSTYVIIADHTKLVEKL-CSKRALPVEVLPYGVSWT---LGNLIKRFNCDARIRI-KDLSPFITDNGNVIVDINC-PPLEDPASMESEVKGVPGVVEVGIFVGLADLVLIARGSEVKV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STAAC (Ribose-5-phosphate isomerase A OS=Staphylococcus aureus (strain COL) GN=rpiA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 59/146 (40.41%), Postives = 85/146 (58.22%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVDP LN++KG GGAL REK+++  +  FVVV DE+K+V  L G    +PVEV +F W + ++R  + + ++  E ++ E      +ITDN NYI+D      I D       +  L GV E G FLDMA  VI+  + GV++  K
Sbjct:   89 EVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYL-GETFKLPVEVDKFNW-YQILRKIESYADIKVERRVNE---DVAFITDNGNYILDCKLPKGI-DPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK 228          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_OLICO7.304e-2039.31Ribose-5-phosphate isomerase A OS=Oligotropha carb... [more]
RPIA_BRAJA7.304e-2038.26Ribose-5-phosphate isomerase A OS=Bradyrhizobium j... [more]
RPIA_STRSV1.627e-1943.36Ribose-5-phosphate isomerase A OS=Streptococcus sa... [more]
RPIA_STAAW1.627e-1940.41Ribose-5-phosphate isomerase A OS=Staphylococcus a... [more]
RPIA_STAAS1.627e-1940.41Ribose-5-phosphate isomerase A OS=Staphylococcus a... [more]
RPIA_STAAR1.627e-1940.41Ribose-5-phosphate isomerase A OS=Staphylococcus a... [more]
RPIA_STAAN1.627e-1940.41Ribose-5-phosphate isomerase A OS=Staphylococcus a... [more]
RPIA_STAAM1.627e-1940.41Ribose-5-phosphate isomerase A OS=Staphylococcus a... [more]
RPIA_KORCO1.627e-1941.26Ribose-5-phosphate isomerase A OS=Korarchaeum cryp... [more]
RPIA_STAAC2.125e-1940.41Ribose-5-phosphate isomerase A OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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