CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SINMW (Ribose-5-phosphate isomerase A OS=Sinorhizobium medicae (strain WSM419) GN=rpiA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 59/141 (41.84%), Postives = 84/141 (59.57%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGK-PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            EVD +L L+KG GGALLREK+V +AS   +V+ADE+K+V  LG  KL  P+EV  F      + ++ +   LG    +    +G  P++TD  + I+D  F   I D  +   E+  + GVVEHGLF++MA+  IIAG  G
Sbjct:   87 EVDGKLRLIKGGGGALLREKIVASASARMIVIADETKVVDVLGAFKL--PIEVNPFGQLATRLAIEKVASRLGLTGDIVVRASGDGPFMTDGGHLILDASFGR-IPDADALAVELNAIPGVVEHGLFIEMASMAIIAGPEG 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PYRKO (Ribose-5-phosphate isomerase A OS=Pyrococcus kodakaraensis GN=rpiA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 54/143 (37.76%), Postives = 84/143 (58.74%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            EVDP +NL+KGRG AL  EK++E  +  F+V+ DESKLV  L G K+ +P+EV+   W+     + +        A+LR   +   P +TDN N+I+D  F   I+D +    E+  + GVVE+G+F D+A  +++    GV+
Sbjct:   89 EVDPHMNLIKGRGAALTMEKIIEYRAGMFIVLVDESKLVEYL-GQKMPVPIEVIPAAWR----AIAEELEVFNATAELRMAVKKDGPVVTDNGNFILDAKF-ARIEDPLDLEIELNTIPGVVENGIFADIADIILVGTPEGVK 225          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STAHJ (Ribose-5-phosphate isomerase A OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpiA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 59/146 (40.41%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVD  +NL+KG GGAL REK+++  +  FVV+ADESKLV+ LG S   +PVEV +F W F++ +  + F ++  E ++    +  P+ITDN NYI+D      I D       +  L GV+E G FL++   VI+  + GV++ +K
Sbjct:   89 EVDVNINLIKGGGGALFREKVIDEMAHRFVVLADESKLVNYLGES-FKLPVEVDKFNW-FHIAKKIEAFDDIITERRM---SDDVPFITDNGNYILDCQLNKQI-DPYQFHEYLIHLTGVLETGYFLNITDQVIVGTQDGVKIINK 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_THET2 (Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpiA PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 62/142 (43.66%), Postives = 86/142 (60.56%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            E+ P L L+KG GGALLREK+VE A+K F+V+AD +K V  LG  +  +PVE+V F ++  L  + D    LG E +LR  +  + Y TD  + I D  F  PI D +     + ++ GVVE GLF+ MAT  ++AG  GVE
Sbjct:   90 EIAPGLALIKGMGGALLREKIVERAAKEFIVIADHTKKVPVLG--RGPVPVEIVPFGYRATLKAIAD----LGGEPELRM-DGDEFYFTDGGHLIADCRF-GPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVE 223          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STAES (Ribose-5-phosphate isomerase A OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpiA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 62/166 (37.35%), Postives = 95/166 (57.23%), Query Frame = 3
Query:  174 MHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            M+++D      + +A+    EVD  LNL+KG GGAL REK+++  +  FVVV DESKLV+ L G   A+PVEV +F W + + +  +   ++    ++ E     P+ITDN NYI+D   +  I         +  L GV+E G FLD+A  VI+  + GV++ +K
Sbjct:   69 MNIVDVNDVEKIDLAIDGADEVDSALNLIKGGGGALFREKVIDEMADRFVVVVDESKLVNYL-GETFALPVEVDKFNW-YQVAKKIERTYDIHVSRRVNE---DVPFITDNGNYILDCSLQNRI-PAYELHEFLIHLTGVLETGYFLDIADQVIVGTQEGVKILNK 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STAEQ (Ribose-5-phosphate isomerase A OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 62/166 (37.35%), Postives = 95/166 (57.23%), Query Frame = 3
Query:  174 MHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            M+++D      + +A+    EVD  LNL+KG GGAL REK+++  +  FVVV DESKLV+ L G   A+PVEV +F W + + +  +   ++    ++ E     P+ITDN NYI+D   +  I         +  L GV+E G FLD+A  VI+  + GV++ +K
Sbjct:   69 MNIVDVNDVEKIDLAIDGADEVDSALNLIKGGGGALFREKVIDEMADRFVVVVDESKLVNYL-GETFALPVEVDKFNW-YQVAKKIERTYDIHVSRRVNE---DVPFITDNGNYILDCSLQNRI-PAYELHEFLIHLTGVLETGYFLDIADQVIVGTQEGVKILNK 228          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_ARCFU (Ribose-5-phosphate isomerase A OS=Archaeoglobus fulgidus GN=rpiA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 59/142 (41.55%), Postives = 88/142 (61.97%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGK--PYITDNFNYIIDLYFETPIKDGVSA-GTEIGKLEGVVEHGLFLDMATAVIIAGKT 647
            +VD +LN +KG GGA+ REK+V  AS+  V++ DESKLV  L    + +PVEV+ F + + L  ++    ++GC+A+LREG+ GK  P ITDN N+++D  F    +D V     EI  + GVVE+G+F       +IAG +
Sbjct:   86 QVDAKLNCIKGGGGAMTREKIVAKASRKVVIIVDESKLVEKL---SMPVPVEVLPFAYGWVLREIE----KMGCKARLREGK-GKIGPVITDNGNFVVDCDFGVIEEDRVEGLEGEIKLISGVVENGIFSKELIDAVIAGSS 219          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRU0 (Ribose-5-phosphate isomerase A OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpiA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 65/143 (45.45%), Postives = 81/143 (56.64%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD E N +KG G ALL EK+V   +K ++ V DESK+V  LG  KL  PVEVVQ    +   RL  +F + G     R  E+ K  ITD  N+IIDL  +  I+        + K  GVVEHGLF  M   VI+AGK GV+V
Sbjct:   86 EVDKEFNGIKGGGAALLMEKIVATPTKEYIWVVDESKMVEKLGAFKL--PVEVVQ----YGAERLFRVFEKAGYNPSFRMKEDQK-LITDMGNFIIDLDLKV-IEKPFEFAEMLDKTVGVVEHGLFNGMVHKVIVAGKDGVKV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHIME (Ribose-5-phosphate isomerase A OS=Rhizobium meliloti GN=rpiA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGK-PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            EVD +L L+KG GGALLREK+V +AS   +V+ADESK+V  LG  KL  P+E+  F      + ++     LG   ++    +G   ++TD  + I+D  F   I D  +   E+  + GVVEHGLF+D+A+  IIAG  G
Sbjct:   87 EVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLGAFKL--PIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGR-IPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEG 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PARUW (Ribose-5-phosphate isomerase A OS=Protochlamydia amoebophila (strain UWE25) GN=rpiA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 55/141 (39.01%), Postives = 82/141 (58.16%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653
            E+DP   ++KG GGALLREK++ +ASK  +VV DE+KLV+ LG  K  +  E+  F ++  + +L+D     G    LR  ++   Y TDN NYI D+ F  PI + +     +    GV+E GLF ++A  VII  + G+
Sbjct:   93 EIDPLKQMIKGGGGALLREKLIASASKEMIVVIDETKLVNKLG--KFPVATEISIFTFRHIVKKLKD----HGYCGSLRVNQDQSLYRTDNGNYIFDICFPEPIDNPIFEHNRLKSFAGVLETGLFFNLAGRVIIGYQNGM 227          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_SINMW2.125e-1941.84Ribose-5-phosphate isomerase A OS=Sinorhizobium me... [more]
RPIA_PYRKO2.125e-1937.76Ribose-5-phosphate isomerase A OS=Pyrococcus kodak... [more]
RPIA_STAHJ3.625e-1940.41Ribose-5-phosphate isomerase A OS=Staphylococcus h... [more]
RPIA_THET26.183e-1943.66Ribose-5-phosphate isomerase A OS=Thermus thermoph... [more]
RPIA_STAES6.183e-1937.35Ribose-5-phosphate isomerase A OS=Staphylococcus e... [more]
RPIA_STAEQ6.183e-1937.35Ribose-5-phosphate isomerase A OS=Staphylococcus e... [more]
RPIA_ARCFU6.183e-1941.55Ribose-5-phosphate isomerase A OS=Archaeoglobus fu... [more]
RPIA_STRU08.076e-1945.45Ribose-5-phosphate isomerase A OS=Streptococcus ub... [more]
RPIA_RHIME1.055e-1841.13Ribose-5-phosphate isomerase A OS=Rhizobium melilo... [more]
RPIA_PARUW1.378e-1839.01Ribose-5-phosphate isomerase A OS=Protochlamydia a... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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