CX288000
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SINMW (Ribose-5-phosphate isomerase A OS=Sinorhizobium medicae (strain WSM419) GN=rpiA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19 Identity = 59/141 (41.84%), Postives = 84/141 (59.57%), Query Frame = 3 Query: 231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGK-PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650 EVD +L L+KG GGALLREK+V +AS +V+ADE+K+V LG KL P+EV F + ++ + LG + +G P++TD + I+D F I D + E+ + GVVEHGLF++MA+ IIAG G Sbjct: 87 EVDGKLRLIKGGGGALLREKIVASASARMIVIADETKVVDVLGAFKL--PIEVNPFGQLATRLAIEKVASRLGLTGDIVVRASGDGPFMTDGGHLILDASFGR-IPDADALAVELNAIPGVVEHGLFIEMASMAIIAGPEG 224
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PYRKO (Ribose-5-phosphate isomerase A OS=Pyrococcus kodakaraensis GN=rpiA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19 Identity = 54/143 (37.76%), Postives = 84/143 (58.74%), Query Frame = 3 Query: 231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656 EVDP +NL+KGRG AL EK++E + F+V+ DESKLV L G K+ +P+EV+ W+ + + A+LR + P +TDN N+I+D F I+D + E+ + GVVE+G+F D+A +++ GV+ Sbjct: 89 EVDPHMNLIKGRGAALTMEKIIEYRAGMFIVLVDESKLVEYL-GQKMPVPIEVIPAAWR----AIAEELEVFNATAELRMAVKKDGPVVTDNGNFILDAKF-ARIEDPLDLEIELNTIPGVVENGIFADIADIILVGTPEGVK 225
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STAHJ (Ribose-5-phosphate isomerase A OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpiA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19 Identity = 59/146 (40.41%), Postives = 89/146 (60.96%), Query Frame = 3 Query: 231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668 EVD +NL+KG GGAL REK+++ + FVV+ADESKLV+ LG S +PVEV +F W F++ + + F ++ E ++ + P+ITDN NYI+D I D + L GV+E G FL++ VI+ + GV++ +K Sbjct: 89 EVDVNINLIKGGGGALFREKVIDEMAHRFVVLADESKLVNYLGES-FKLPVEVDKFNW-FHIAKKIEAFDDIITERRM---SDDVPFITDNGNYILDCQLNKQI-DPYQFHEYLIHLTGVLETGYFLNITDQVIVGTQDGVKIINK 228
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_THET2 (Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpiA PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19 Identity = 62/142 (43.66%), Postives = 86/142 (60.56%), Query Frame = 3 Query: 231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656 E+ P L L+KG GGALLREK+VE A+K F+V+AD +K V LG + +PVE+V F ++ L + D LG E +LR + + Y TD + I D F PI D + + ++ GVVE GLF+ MAT ++AG GVE Sbjct: 90 EIAPGLALIKGMGGALLREKIVERAAKEFIVIADHTKKVPVLG--RGPVPVEIVPFGYRATLKAIAD----LGGEPELRM-DGDEFYFTDGGHLIADCRF-GPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVE 223
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STAES (Ribose-5-phosphate isomerase A OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpiA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19 Identity = 62/166 (37.35%), Postives = 95/166 (57.23%), Query Frame = 3 Query: 174 MHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668 M+++D + +A+ EVD LNL+KG GGAL REK+++ + FVVV DESKLV+ L G A+PVEV +F W + + + + ++ ++ E P+ITDN NYI+D + I + L GV+E G FLD+A VI+ + GV++ +K Sbjct: 69 MNIVDVNDVEKIDLAIDGADEVDSALNLIKGGGGALFREKVIDEMADRFVVVVDESKLVNYL-GETFALPVEVDKFNW-YQVAKKIERTYDIHVSRRVNE---DVPFITDNGNYILDCSLQNRI-PAYELHEFLIHLTGVLETGYFLDIADQVIVGTQEGVKILNK 228
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STAEQ (Ribose-5-phosphate isomerase A OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpiA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19 Identity = 62/166 (37.35%), Postives = 95/166 (57.23%), Query Frame = 3 Query: 174 MHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668 M+++D + +A+ EVD LNL+KG GGAL REK+++ + FVVV DESKLV+ L G A+PVEV +F W + + + + ++ ++ E P+ITDN NYI+D + I + L GV+E G FLD+A VI+ + GV++ +K Sbjct: 69 MNIVDVNDVEKIDLAIDGADEVDSALNLIKGGGGALFREKVIDEMADRFVVVVDESKLVNYL-GETFALPVEVDKFNW-YQVAKKIERTYDIHVSRRVNE---DVPFITDNGNYILDCSLQNRI-PAYELHEFLIHLTGVLETGYFLDIADQVIVGTQEGVKILNK 228
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_ARCFU (Ribose-5-phosphate isomerase A OS=Archaeoglobus fulgidus GN=rpiA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19 Identity = 59/142 (41.55%), Postives = 88/142 (61.97%), Query Frame = 3 Query: 231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGK--PYITDNFNYIIDLYFETPIKDGVSA-GTEIGKLEGVVEHGLFLDMATAVIIAGKT 647 +VD +LN +KG GGA+ REK+V AS+ V++ DESKLV L + +PVEV+ F + + L ++ ++GC+A+LREG+ GK P ITDN N+++D F +D V EI + GVVE+G+F +IAG + Sbjct: 86 QVDAKLNCIKGGGGAMTREKIVAKASRKVVIIVDESKLVEKL---SMPVPVEVLPFAYGWVLREIE----KMGCKARLREGK-GKIGPVITDNGNFVVDCDFGVIEEDRVEGLEGEIKLISGVVENGIFSKELIDAVIAGSS 219
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRU0 (Ribose-5-phosphate isomerase A OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpiA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19 Identity = 65/143 (45.45%), Postives = 81/143 (56.64%), Query Frame = 3 Query: 231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659 EVD E N +KG G ALL EK+V +K ++ V DESK+V LG KL PVEVVQ + RL +F + G R E+ K ITD N+IIDL + I+ + K GVVEHGLF M VI+AGK GV+V Sbjct: 86 EVDKEFNGIKGGGAALLMEKIVATPTKEYIWVVDESKMVEKLGAFKL--PVEVVQ----YGAERLFRVFEKAGYNPSFRMKEDQK-LITDMGNFIIDLDLKV-IEKPFEFAEMLDKTVGVVEHGLFNGMVHKVIVAGKDGVKV 220
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHIME (Ribose-5-phosphate isomerase A OS=Rhizobium meliloti GN=rpiA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18 Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 3 Query: 231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGK-PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650 EVD +L L+KG GGALLREK+V +AS +V+ADESK+V LG KL P+E+ F + ++ LG ++ +G ++TD + I+D F I D + E+ + GVVEHGLF+D+A+ IIAG G Sbjct: 87 EVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLGAFKL--PIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGR-IPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEG 224
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_PARUW (Ribose-5-phosphate isomerase A OS=Protochlamydia amoebophila (strain UWE25) GN=rpiA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18 Identity = 55/141 (39.01%), Postives = 82/141 (58.16%), Query Frame = 3 Query: 231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653 E+DP ++KG GGALLREK++ +ASK +VV DE+KLV+ LG K + E+ F ++ + +L+D G LR ++ Y TDN NYI D+ F PI + + + GV+E GLF ++A VII + G+ Sbjct: 93 EIDPLKQMIKGGGGALLREKLIASASKEMIVVIDETKLVNKLG--KFPVATEISIFTFRHIVKKLKD----HGYCGSLRVNQDQSLYRTDNGNYIFDICFPEPIDNPIFEHNRLKSFAGVLETGLFFNLAGRVIIGYQNGM 227 The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 350
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bpback to top |