CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_LISMC (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpiA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 52/140 (37.14%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            E+D +   +KG GGALLREKMV +AS   + V  E KLV  LG  K  +P+EV+ F WK    +++    +   +  LR   +G+ Y+T+N NYI+D+  +T  +D      ++ ++ G+VEHGLFL     ++ A   G
Sbjct:   85 EIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG--KFPLPIEVIPFGWK----QIERTLEKEHVQTILRRQSSGEIYVTNNGNYILDIVNQT-FRDAEMWQEKLAQIPGIVEHGLFLHYVDIIVCAKANG 217          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_LISMO (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes GN=rpiA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 650
            E+D +   +KG GGALLREKMV +AS   + V  E KLV  LG  K  +P+EV+ F WK    +++    +   +  LR+  +G+ Y+T+N NYI+D+  +T   D      ++ ++ G+VEHGLFL     +I A   G
Sbjct:   85 EIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG--KFPLPLEVIPFGWK----QVERKLEKEHIQTNLRKQSSGEVYVTNNGNYILDIVNQT-FTDAEMWQEKLAQIPGIVEHGLFLHYVDIIICAKANG 217          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_LACLS (Ribose-5-phosphate isomerase A OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpiA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 58/146 (39.73%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            E+D  LN +KG G ALL EK+V   SK ++ + DESKL   LG  K  +PVEV+    ++   +L   F         R  E G+  ITD  ++IIDL+    I++      E+  + GVVEHGLF DM   VI+AG  GV++ S+
Sbjct:   86 EIDSHLNGIKGGGAALLMEKIVATYSKDYIWIVDESKLSENLGSFK--VPVEVI----RYGSEQLFKEFERAAYAPTWRLNEEGEKLITDMQHFIIDLHI-AKIENPQKLADELDLMVGVVEHGLFNDMVKKVIVAGSDGVKIISQ 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SILST (Ribose-5-phosphate isomerase A OS=Silicibacter sp. (strain TM1040) GN=rpiA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRE---LGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIA-GKTGVEVK 662
            E D ELNL+KG GGALL+EK+V  AS   VV+AD++K V  LG     +P+EV+ F W+ +   +++       +G  + LR      PY+TD  N+I+DL+    I +       + ++ GVVE+GLF+D+   V+I  G   VEV+
Sbjct:   93 EFDSELNLIKGGGGALLQEKIVATASDQMVVIADKAKEVETLGA--FPLPIEVIPFGWQTSQALVEETLISMDVMGRSSTLRM-NGASPYVTDEGNHILDLHLNR-IGNPRQLALVLNQIPGVVENGLFIDICDTVVIGYGDGKVEVR 236          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_MARMM (Ribose-5-phosphate isomerase A OS=Maricaulis maris (strain MCS10) GN=rpiA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAK----LREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 635
            EVD    L+KG G  LLREK++  AS   +V+ DESKLV+ LG  K  +PVEV +F +     ++ +  R  G ++      R+G+  +P +TD  NYI+D   E  I D  +    +  + GVVEHGLF+++A  VI+
Sbjct:   87 EVDGRFQLIKGGGACLLREKIIAHASDLMIVMVDESKLVATLG--KFPLPVEVDRFGFSLTASQVYEALRRAGIKSPDVQLRRKGDGLEPLVTDGGNYILDCACEA-IPDAGAVDRALKAIPGVVEHGLFINLARVVIV 222          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SILPO (Ribose-5-phosphate isomerase A OS=Silicibacter pomeroyi GN=rpiA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 58/148 (39.19%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRE---LGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIA-GKTGVEVK 662
            E D +LNL+KG GGALL+EK+V  AS   VV+AD  K VS LG     +PVEV+ F W+     L++       LG  A LR      P++TD  N+I+DL+ +  I +       + ++ GVVE+GLF+D+   V++  G   VE++
Sbjct:   93 EFDGDLNLIKGGGGALLQEKIVATASDQMVVIADLGKEVSRLGA--FPLPVEVIPFGWQTTQALLEETLISMDVLGRTATLRM-NGDTPFVTDEGNHILDLHLQR-IGNARQLALVLNQIPGVVENGLFIDICDTVVVGHGDGRVEIR 236          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_LACLA (Ribose-5-phosphate isomerase A OS=Lactococcus lactis subsp. lactis GN=rpiA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 57/146 (39.04%), Postives = 80/146 (54.79%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            E+D  LN +KG G ALL EK+V   SK ++ + DESKL   LG  K+  PVEV+     +   ++   F   G     R  E  +  ITD  ++IIDL+  + IK+      E+  + GVVEHGLF +M   VI+AG  GV + +K
Sbjct:   86 EIDSSLNGIKGGGAALLMEKIVATYSKDYIWIVDESKLSENLGSFKI--PVEVI----PYGSQQVFKKFEAAGYAPTWRLNEENERLITDMHHFIIDLHI-SQIKEPEKLAEELDLMGGVVEHGLFNNMVKKVIVAGNEGVRIINK 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRPZ (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 63/143 (44.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    +   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   86 EVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVTV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRPM (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M28 GN=rpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 63/143 (44.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    +   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   86 EVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVTV 220          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRPG (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 63/143 (44.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVD + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    +   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   86 EVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVTV 220          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_LISMC4.008e-1837.14Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_LISMO5.235e-1837.86Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_LACLS5.235e-1839.73Ribose-5-phosphate isomerase A OS=Lactococcus lact... [more]
RPIA_SILST6.836e-1838.51Ribose-5-phosphate isomerase A OS=Silicibacter sp.... [more]
RPIA_MARMM8.929e-1838.85Ribose-5-phosphate isomerase A OS=Maricaulis maris... [more]
RPIA_SILPO1.166e-1739.19Ribose-5-phosphate isomerase A OS=Silicibacter pom... [more]
RPIA_LACLA1.166e-1739.04Ribose-5-phosphate isomerase A OS=Lactococcus lact... [more]
RPIA_STRPZ1.523e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRPM1.523e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRPG1.523e-1744.06Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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