CX288003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: LRRC9_HUMAN (Leucine-rich repeat-containing protein 9 OS=Homo sapiens GN=LRRC9 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11 Identity = 44/139 (31.65%), Postives = 75/139 (53.96%), Query Frame = 1 Query: 61 IKSLTLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLRHCVNLKWLSVVQNKLQSLKGIEGLSKLTVLNAGKNKLRSMDE--VMSVVSLRALILNDNEIVSICKLDQMKELNSLVLSRNPIRKIGDSLLNMKAITKL 471 I +L L + L +++ L NL+ S+NNLT +EGL C+NL+ L++ N + ++GI ++KLT L+ N L +E +++ L +L L +N I S+ L + L L +S N I + + N+K + L Sbjct: 889 ITALNLDGQHLFEITNLEKLENLKWASFSNNNLTKMEGLESCINLEELTLDGNCISKIEGISKMTKLTRLSINNNLLTGWEEHTFDNMLHLHSLSLENNRITSLSGLQKSFTLVELYISNNYI-AVNQEMHNLKGLCNL 1026
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: SHOC2_MOUSE (Leucine-rich repeat protein SHOC-2 OS=Mus musculus GN=Shoc2 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11 Identity = 59/213 (27.70%), Postives = 110/213 (51.64%), Query Frame = 1 Query: 13 STEQILKD-NKTGDPNSIKSLTLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEGLRHC-VNLKWLSVVQNKLQSLK-GIEGLSKLTVLNAGKNKLRSMDEVM-SVVSLRALILNDNEIVSICK-LDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLADNDIKTLPAKLAFNKKLQNLDLGKNLIT 633 S +++K+ NK + NS++ L L+ +++ + + + L L L SN L SL C VNL L++ +N L SL ++ L KL +L+ NKLR + V+ + SL L L N I ++ K + + +L+ L + N I+++ + + + L +++ Q++ + + +CT++ L L ND+ LP + L L L N ++ Sbjct: 86 SNAEVIKELNKCREENSMR-LDLSKRSIHILPPSVKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLPKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNDLLDLPDTIGNLSSLNRLGLRYNRLS 297
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: LRRC9_MOUSE (Leucine-rich repeat-containing protein 9 OS=Mus musculus GN=Lrrc9 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11 Identity = 45/151 (29.80%), Postives = 81/151 (53.64%), Query Frame = 1 Query: 55 NSIKSLTLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLRHCVNLKWLSVVQNKLQSLKGIEGLSKLTVLNAGKNKLRSMDE--VMSVVSLRALILNDNEIVSICKLDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQII 501 + I +L L + L +++ L NL+ S+NNL+ +EGL CVNL+ L++ N + ++GI L+KL+ L+ N L +++ +++ L +L L +N I S+ L + L L +S N I + + N+K + L + + II Sbjct: 877 SKITALNLDGQHLFEITNLEKLENLKWASFSNNNLSKMEGLESCVNLEELTLDGNCISKIEGITRLTKLSRLSMNNNLLTGLEKHTFDNLLHLHSLSLENNRITSLSALQKTFTLIELYISNNYI-AVNQEIYNLKGLCNLVILDMYGNII 1026
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: LRC40_CHICK (Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11 Identity = 61/206 (29.61%), Postives = 97/206 (47.09%), Query Frame = 1 Query: 103 SCLTDFNNLERLDLSSNNLTSL-EGLRHCVNLKWLSVVQNKLQSL------------------------KGIEGLSKLTVLNAGKNKLRSMD-EVMSVVSLRALILNDNEIVSI-CKLDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLADNDIKTLPAKLAFNKKLQNLDLGKNLITR 636 S L NL++LD+S N L S+ E L +LK L + N+L L K L L LN N+L+ + ++ ++ SLR L N + S+ +L M L L L +N +R + + L + K + +L Q++I+ + +LK L L L DN IK++P ++ +KL+ LDL N I+R Sbjct: 122 SALGQLENLQKLDVSHNKLKSIPEELLQLSHLKGLLLQHNELSHLPDGFGQLVSLEELDLSNNHLTDIPKSFALLINLVRLNLACNQLKDLPADISAMKSLRQLDCTKNYLESVPSELASMASLEQLYLRKNKLRSLPE-LPSCKLLKELHAGENQIEILNAENLKHLNSLSVLELRDNKIKSVPDEITLLQKLERLDLANNDISR 326
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: LRGUK_HUMAN (Leucine-rich repeat and guanylate kinase domain-containing protein OS=Homo sapiens GN=LRGUK PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11 Identity = 63/215 (29.30%), Postives = 100/215 (46.51%), Query Frame = 1 Query: 67 SLTLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLRHCVNLKWLSVVQNKLQSLKGIEGLSKLTVLNAGKNKLRSMDEVMSVVSLRALILNDNEIVSICKLDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLADNDIKTLPAKLAFNKKLQNLDLGKNLITRWSEXXXXXXXXXXNKPHLQGNPVAE 711 +LTL+ L DVS L + +L++LDLS+N + L + L L+ QN L + + L + N++ + ++ + +L LIL+ NEI I L+ L L L+ N I I LN I L LSN Q+++I + L+ L+ L L+ N I +L L + L+ ++L N I E +L NP+ E Sbjct: 131 NLTLSGCNLIDVSILCGYVHLQKLDLSANKIEDLSCVSCMPYLLELNASQNNLTTFFNFKPPKNLKKADFSHNQISEICDLSAYHALTKLILDGNEIEEISGLEMCNNLIHLSLANNKITTING--LNKLPIKILCLSNNQIEMI-TGLEDLKALQNLDLSHNQISSLQG-LENHDLLEVINLEDNKIAELREIEYIKNLPILRVLNLLENPIQE 341
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: LRC23_BOVIN (Leucine-rich repeat-containing protein 23 OS=Bos taurus GN=LRRC23 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11 Identity = 63/220 (28.64%), Postives = 107/220 (48.64%), Query Frame = 1 Query: 16 TEQILKDN-----KTGD--PNSIKSLTLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLRHCVNLKWLSVVQNKLQSLKGIEGLSKLTVLNAGKNKLRSMDEVMSVVSLRALILNDNEIVSICKLDQMK--ELNSLVLSRNPIRK-IGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLADNDIKTLPAKLAFNKKLQNLDLGKNLITRWSE 645 TE ++K+ KTG+ ++ L + + L+D+ L + +L +D+S N+LT L L H NL WL N+L+S + + L L + + N++ E +S L +L L N I + LD K L++L L N + +G +N+ + L L+ ++ + L++ + L L L DN I+TL K LQ L+L N++ E Sbjct: 48 TEDMMKEGLSLLCKTGNGLAHAYVKLEIKDRDLTDIHLLRSYIHLRYVDVSENHLTDLSPLNHLTNLLWLKADGNQLRSAR-LNELPYLQIASFAYNQITD-TEGISHPRLASLDLKGNRIHMVTGLDPQKLISLHTLELRGNQLNSTLG---INLPKLKNLFLAQNMLKKV-EGLENLSNLTTLHLRDNQIETLSGFSKEMKSLQYLNLRGNMVADLGE 261
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: YG015_MACFA (Leucine-rich repeat and death domain-containing protein LOC401387 homolog OS=Macaca fascicularis GN=QtsA-18164 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 57/201 (28.36%), Postives = 108/201 (53.73%), Query Frame = 1 Query: 43 TGDPNSIKSLTLTHKALSDV-SCLTDFNNLERLDLSSNNLTSL-EGLRHCVNLKWLSVVQNKLQSLKG-IEGLSKLTVLNAGKNKLRSM-DEVMSVVSLRALILNDNEIVSICK-LDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLADNDIKTLPAKLAFNKKLQNLDLGKNLI 630 +GD ++ L+L LS + S + +NL L++S N+++ + + + N++ L N +++ +E L L +L+ GKNKLR + D + S+ LR L L N++ K L + +L SL L+ N I + + +K + L L + ++ + + ++KEL+LADN ++ + K+ ++L+ L L KNL+ Sbjct: 187 SGDLLGLEILSLQENGLSSLPSEIQLLHNLRILNVSHNHISHIPKEISQLGNIRQLFFYNNYIENFPSDLECLGNLEILSLGKNKLRHIPDTLPSLKYLRVLNLEYNQLTIFPKALCFLPKLISLDLTGNLISSLPKEIRELKNLETLLLDHNKLTFLAVEIFQLLKIKELQLADNKLEVISHKIENFRELRILILDKNLL 387 HSP 2 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 60/221 (27.15%), Postives = 106/221 (47.96%), Query Frame = 1 Query: 67 SLTLTHKALSDVSC-LTDFNNLERLDLSSNNLTSLE-GLRHCVNLKWLSVVQNKLQSLKG-IEGLSKLTVLNAGKNKLRSMDE-VMSVVSLRALILNDNEIVSICK-LDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLADNDI-----------------------KTLPAKLAFNKKLQNLDLGKNLITRWSE 645 SL LT +S + + + NLE L L N LT L + + +K L + NKL+ + IE +L +L KN L+++ E + L L L+DN++ + K + ++ L L ++RN + KI DS+ ++ I L S + I +K+C ++ ++ L N I +PA ++F+K+L +L+L +N + +SE Sbjct: 310 SLDLTGNLISSLPKEIRELKNLETLLLDHNKLTFLAVEIFQLLKIKELQLADNKLEVISHKIENFRELRILILDKNLLKNIPEKICCCAMLECLTLSDNKLTELPKNIHKLNNLRKLHVNRNNMVKITDSISHLNNICSLEFSGNIIAGIPIEIKNCQKIIKIELNYNKIMYFPLGLCALDSLYYLSVNGNYISEIPADISFSKQLLHLELSENKLLIFSE 530
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: LRGUK_MOUSE (Leucine-rich repeat and guanylate kinase domain-containing protein OS=Mus musculus GN=Lrguk PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 62/213 (29.11%), Postives = 99/213 (46.48%), Query Frame = 1 Query: 67 SLTLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLRHCVNLKWLSVVQNKLQSLKGIEGLSKLTVLNAGKNKLRSMDEVMSVVSLRALILNDNEIVSICKLDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLADNDIKTLPAKLAFNKKLQNLDLGKNLITRWSEXXXXXXXXXXNKPHLQGNPV 705 +L L+H L D+S L + +L++L+LS N + L + L L+ QNKL + + L ++ N + M ++ + +L LIL++NEI I L+ L L L+ N I I L I LSLSN ++ I + L+ L+ L L+ N I +L L + L+ ++L N I SE +L NP+ Sbjct: 131 NLNLSHCELVDISILCGYVHLQKLNLSGNRIEDLSCVSCMPYLLELNASQNKLTTFFNFKPPQNLKKVDFSSNLISEMYDLSAYHTLTQLILDNNEIEEITGLENCISLTHLSLAGNKITTIKG--LGTLPIKVLSLSNNMIETI-TGLEELKALQNLDLSHNQISSLQG-LENHDLLEVINLEDNKIKELSEIEYIENLPILRVLNLLRNPI 339 The following BLAST results are available for this feature:
BLAST of CX288003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288003 ID=CX288003; Name=CX288003; organism=Citrus clementina; type=EST; length=720bpback to top |