CX288003

Overview
NameCX288003
Unique NameCX288003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: LRRC9_HUMAN (Leucine-rich repeat-containing protein 9 OS=Homo sapiens GN=LRRC9 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 44/139 (31.65%), Postives = 75/139 (53.96%), Query Frame = 1
Query:   61 IKSLTLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLRHCVNLKWLSVVQNKLQSLKGIEGLSKLTVLNAGKNKLRSMDE--VMSVVSLRALILNDNEIVSICKLDQMKELNSLVLSRNPIRKIGDSLLNMKAITKL 471
            I +L L  + L +++ L    NL+    S+NNLT +EGL  C+NL+ L++  N +  ++GI  ++KLT L+   N L   +E    +++ L +L L +N I S+  L +   L  L +S N I  +   + N+K +  L
Sbjct:  889 ITALNLDGQHLFEITNLEKLENLKWASFSNNNLTKMEGLESCINLEELTLDGNCISKIEGISKMTKLTRLSINNNLLTGWEEHTFDNMLHLHSLSLENNRITSLSGLQKSFTLVELYISNNYI-AVNQEMHNLKGLCNL 1026          
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: SHOC2_MOUSE (Leucine-rich repeat protein SHOC-2 OS=Mus musculus GN=Shoc2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 59/213 (27.70%), Postives = 110/213 (51.64%), Query Frame = 1
Query:   13 STEQILKD-NKTGDPNSIKSLTLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEGLRHC-VNLKWLSVVQNKLQSLK-GIEGLSKLTVLNAGKNKLRSMDEVM-SVVSLRALILNDNEIVSICK-LDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLADNDIKTLPAKLAFNKKLQNLDLGKNLIT 633
            S  +++K+ NK  + NS++ L L+ +++  +   + +   L  L L SN L SL     C VNL  L++ +N L SL   ++ L KL +L+   NKLR +  V+  + SL  L L  N I ++ K +  + +L+ L +  N I+++   +  +  +  L +++ Q++ +   + +CT++  L L  ND+  LP  +     L  L L  N ++
Sbjct:   86 SNAEVIKELNKCREENSMR-LDLSKRSIHILPPSVKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLPKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNDLLDLPDTIGNLSSLNRLGLRYNRLS 297          
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: LRRC9_MOUSE (Leucine-rich repeat-containing protein 9 OS=Mus musculus GN=Lrrc9 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 45/151 (29.80%), Postives = 81/151 (53.64%), Query Frame = 1
Query:   55 NSIKSLTLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLRHCVNLKWLSVVQNKLQSLKGIEGLSKLTVLNAGKNKLRSMDE--VMSVVSLRALILNDNEIVSICKLDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQII 501
            + I +L L  + L +++ L    NL+    S+NNL+ +EGL  CVNL+ L++  N +  ++GI  L+KL+ L+   N L  +++    +++ L +L L +N I S+  L +   L  L +S N I  +   + N+K +  L + +    II
Sbjct:  877 SKITALNLDGQHLFEITNLEKLENLKWASFSNNNLSKMEGLESCVNLEELTLDGNCISKIEGITRLTKLSRLSMNNNLLTGLEKHTFDNLLHLHSLSLENNRITSLSALQKTFTLIELYISNNYI-AVNQEIYNLKGLCNLVILDMYGNII 1026          
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: LRC40_CHICK (Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 61/206 (29.61%), Postives = 97/206 (47.09%), Query Frame = 1
Query:  103 SCLTDFNNLERLDLSSNNLTSL-EGLRHCVNLKWLSVVQNKLQSL------------------------KGIEGLSKLTVLNAGKNKLRSMD-EVMSVVSLRALILNDNEIVSI-CKLDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLADNDIKTLPAKLAFNKKLQNLDLGKNLITR 636
            S L    NL++LD+S N L S+ E L    +LK L +  N+L  L                        K    L  L  LN   N+L+ +  ++ ++ SLR L    N + S+  +L  M  L  L L +N +R + + L + K + +L     Q++I+ + +LK    L  L L DN IK++P ++   +KL+ LDL  N I+R
Sbjct:  122 SALGQLENLQKLDVSHNKLKSIPEELLQLSHLKGLLLQHNELSHLPDGFGQLVSLEELDLSNNHLTDIPKSFALLINLVRLNLACNQLKDLPADISAMKSLRQLDCTKNYLESVPSELASMASLEQLYLRKNKLRSLPE-LPSCKLLKELHAGENQIEILNAENLKHLNSLSVLELRDNKIKSVPDEITLLQKLERLDLANNDISR 326          
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: LRGUK_HUMAN (Leucine-rich repeat and guanylate kinase domain-containing protein OS=Homo sapiens GN=LRGUK PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 63/215 (29.30%), Postives = 100/215 (46.51%), Query Frame = 1
Query:   67 SLTLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLRHCVNLKWLSVVQNKLQSLKGIEGLSKLTVLNAGKNKLRSMDEVMSVVSLRALILNDNEIVSICKLDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLADNDIKTLPAKLAFNKKLQNLDLGKNLITRWSEXXXXXXXXXXNKPHLQGNPVAE 711
            +LTL+   L DVS L  + +L++LDLS+N +  L  +     L  L+  QN L +    +    L   +   N++  + ++ +  +L  LIL+ NEI  I  L+    L  L L+ N I  I    LN   I  L LSN Q+++I + L+    L+ L L+ N I +L   L  +  L+ ++L  N I    E             +L  NP+ E
Sbjct:  131 NLTLSGCNLIDVSILCGYVHLQKLDLSANKIEDLSCVSCMPYLLELNASQNNLTTFFNFKPPKNLKKADFSHNQISEICDLSAYHALTKLILDGNEIEEISGLEMCNNLIHLSLANNKITTING--LNKLPIKILCLSNNQIEMI-TGLEDLKALQNLDLSHNQISSLQG-LENHDLLEVINLEDNKIAELREIEYIKNLPILRVLNLLENPIQE 341          
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: LRC23_BOVIN (Leucine-rich repeat-containing protein 23 OS=Bos taurus GN=LRRC23 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 63/220 (28.64%), Postives = 107/220 (48.64%), Query Frame = 1
Query:   16 TEQILKDN-----KTGD--PNSIKSLTLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLRHCVNLKWLSVVQNKLQSLKGIEGLSKLTVLNAGKNKLRSMDEVMSVVSLRALILNDNEIVSICKLDQMK--ELNSLVLSRNPIRK-IGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLADNDIKTLPAKLAFNKKLQNLDLGKNLITRWSE 645
            TE ++K+      KTG+   ++   L +  + L+D+  L  + +L  +D+S N+LT L  L H  NL WL    N+L+S + +  L  L + +   N++    E +S   L +L L  N I  +  LD  K   L++L L  N +   +G   +N+  +  L L+   ++ +   L++ + L  L L DN I+TL       K LQ L+L  N++    E
Sbjct:   48 TEDMMKEGLSLLCKTGNGLAHAYVKLEIKDRDLTDIHLLRSYIHLRYVDVSENHLTDLSPLNHLTNLLWLKADGNQLRSAR-LNELPYLQIASFAYNQITD-TEGISHPRLASLDLKGNRIHMVTGLDPQKLISLHTLELRGNQLNSTLG---INLPKLKNLFLAQNMLKKV-EGLENLSNLTTLHLRDNQIETLSGFSKEMKSLQYLNLRGNMVADLGE 261          
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: YG015_MACFA (Leucine-rich repeat and death domain-containing protein LOC401387 homolog OS=Macaca fascicularis GN=QtsA-18164 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 57/201 (28.36%), Postives = 108/201 (53.73%), Query Frame = 1
Query:   43 TGDPNSIKSLTLTHKALSDV-SCLTDFNNLERLDLSSNNLTSL-EGLRHCVNLKWLSVVQNKLQSLKG-IEGLSKLTVLNAGKNKLRSM-DEVMSVVSLRALILNDNEIVSICK-LDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLADNDIKTLPAKLAFNKKLQNLDLGKNLI 630
            +GD   ++ L+L    LS + S +   +NL  L++S N+++ + + +    N++ L    N +++    +E L  L +L+ GKNKLR + D + S+  LR L L  N++    K L  + +L SL L+ N I  +   +  +K +  L L + ++  +   +    ++KEL+LADN ++ +  K+   ++L+ L L KNL+
Sbjct:  187 SGDLLGLEILSLQENGLSSLPSEIQLLHNLRILNVSHNHISHIPKEISQLGNIRQLFFYNNYIENFPSDLECLGNLEILSLGKNKLRHIPDTLPSLKYLRVLNLEYNQLTIFPKALCFLPKLISLDLTGNLISSLPKEIRELKNLETLLLDHNKLTFLAVEIFQLLKIKELQLADNKLEVISHKIENFRELRILILDKNLL 387          

HSP 2 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 60/221 (27.15%), Postives = 106/221 (47.96%), Query Frame = 1
Query:   67 SLTLTHKALSDVSC-LTDFNNLERLDLSSNNLTSLE-GLRHCVNLKWLSVVQNKLQSLKG-IEGLSKLTVLNAGKNKLRSMDE-VMSVVSLRALILNDNEIVSICK-LDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLADNDI-----------------------KTLPAKLAFNKKLQNLDLGKNLITRWSE 645
            SL LT   +S +   + +  NLE L L  N LT L   +   + +K L +  NKL+ +   IE   +L +L   KN L+++ E +     L  L L+DN++  + K + ++  L  L ++RN + KI DS+ ++  I  L  S   +  I   +K+C ++ ++ L  N I                         +PA ++F+K+L +L+L +N +  +SE
Sbjct:  310 SLDLTGNLISSLPKEIRELKNLETLLLDHNKLTFLAVEIFQLLKIKELQLADNKLEVISHKIENFRELRILILDKNLLKNIPEKICCCAMLECLTLSDNKLTELPKNIHKLNNLRKLHVNRNNMVKITDSISHLNNICSLEFSGNIIAGIPIEIKNCQKIIKIELNYNKIMYFPLGLCALDSLYYLSVNGNYISEIPADISFSKQLLHLELSENKLLIFSE 530          
BLAST of CX288003 vs. ExPASy Swiss-Prot
Match: LRGUK_MOUSE (Leucine-rich repeat and guanylate kinase domain-containing protein OS=Mus musculus GN=Lrguk PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 62/213 (29.11%), Postives = 99/213 (46.48%), Query Frame = 1
Query:   67 SLTLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLRHCVNLKWLSVVQNKLQSLKGIEGLSKLTVLNAGKNKLRSMDEVMSVVSLRALILNDNEIVSICKLDQMKELNSLVLSRNPIRKIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLADNDIKTLPAKLAFNKKLQNLDLGKNLITRWSEXXXXXXXXXXNKPHLQGNPV 705
            +L L+H  L D+S L  + +L++L+LS N +  L  +     L  L+  QNKL +    +    L  ++   N +  M ++ +  +L  LIL++NEI  I  L+    L  L L+ N I  I    L    I  LSLSN  ++ I + L+    L+ L L+ N I +L   L  +  L+ ++L  N I   SE             +L  NP+
Sbjct:  131 NLNLSHCELVDISILCGYVHLQKLNLSGNRIEDLSCVSCMPYLLELNASQNKLTTFFNFKPPQNLKKVDFSSNLISEMYDLSAYHTLTQLILDNNEIEEITGLENCISLTHLSLAGNKITTIKG--LGTLPIKVLSLSNNMIETI-TGLEELKALQNLDLSHNQISSLQG-LENHDLLEVINLEDNKIKELSEIEYIENLPILRVLNLLRNPI 339          
The following BLAST results are available for this feature:
BLAST of CX288003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
LRRC9_HUMAN3.964e-1131.65Leucine-rich repeat-containing protein 9 OS=Homo s... [more]
SHOC2_MOUSE5.178e-1127.70Leucine-rich repeat protein SHOC-2 OS=Mus musculus... [more]
LRRC9_MOUSE5.178e-1129.80Leucine-rich repeat-containing protein 9 OS=Mus mu... [more]
LRC40_CHICK5.178e-1129.61Leucine-rich repeat-containing protein 40 OS=Gallu... [more]
LRGUK_HUMAN6.762e-1129.30Leucine-rich repeat and guanylate kinase domain-co... [more]
LRC23_BOVIN6.762e-1128.64Leucine-rich repeat-containing protein 23 OS=Bos t... [more]
YG015_MACFA8.832e-1128.36Leucine-rich repeat and death domain-containing pr... [more]
LRGUK_MOUSE8.832e-1129.11Leucine-rich repeat and guanylate kinase domain-co... [more]

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Properties
Property NameValue
Genbank descriptionC01015G04SK Veg1 Citrus clementina cDNA clone C01015G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288003 ID=CX288003; Name=CX288003; organism=Citrus clementina; type=EST; length=720bp
ATGACACGACTGAGCACCGAGCAAATTTTGAAGGACAACAAGACTGGCGA
TCCCAATTCCATAAAATCTCTGACTCTCACTCACAAAGCTCTCTCCGACG
TCTCTTGCTTGACCGATTTCAACAACTTGGAGAGACTCGACCTTAGCTCC
AACAACCTCACTTCTCTTGAGGGGTTGAGGCATTGCGTGAATTTGAAGTG
GCTATCAGTTGTGCAAAACAAATTGCAAAGCTTAAAAGGAATCGAAGGAC
TCTCTAAGCTCACTGTGTTGAATGCGGGCAAAAATAAGCTTAGATCGATG
GATGAGGTGATGTCTGTCGTGAGCTTACGTGCTTTAATTCTGAATGACAA
TGAGATTGTTTCGATATGCAAACTTGATCAGATGAAGGAATTGAACTCTC
TTGTTCTTTCTCGAAATCCAATTCGCAAAATTGGCGATTCTCTGCTCAAT
ATGAAAGCTATTACAAAGCTCTCTCTCTCAAACTGCCAAGTCCAGATTAT
TGGTTCTTCGCTCAAGTCTTGCACAGAATTGAAAGAACTCCGACTTGCTG
ACAATGACATTAAGACTCTTCCGGCCAAGTTGGCTTTTAATAAGAAGCTT
CAAAATTTAGACTTAGGAAAGAACTTGATCACAAGATGGTCAGAATTGAA
GGTGCTGAAGTCATTAGTCAGTCTGAATAAACCTCATCTACAAGGAAACC
CTGTAGCTGAATATGATAAA
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