CX288008

Overview
NameCX288008
Unique NameCX288008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288008 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.647e-36
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 2 
Query:   17 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 361
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   S I DIDK+KYLVP+D+TV QF++++RKRI+L +EKAIF+FV   +P ++  M  +YE+ KDEDGFLY+ YSGENTFG
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
[Close]
BLAST of CX288008 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.647e-36
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 2 
Query:   17 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 361
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   S I DIDK+KYLVP+D+TV QF++++RKRI+L +EKAIF+FV   +P ++  M  +YE+ KDEDGFLY+ YSGENTFG
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
[Close]
BLAST of CX288008 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.647e-36
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 2 
Query:   17 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 361
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   S I DIDK+KYLVP+D+TV QF++++RKRI+L +EKAIF+FV   +P ++  M  +YE+ KDEDGFLY+ YSGENTFG
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
[Close]
BLAST of CX288008 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.386e-35
Identity = 67/115 (58.26%), Postives = 92/115 (80.00%), Query Frame = 2 
Query:   17 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 361
            K  +K EHP E+R++E  +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
[Close]
BLAST of CX288008 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.386e-35
Identity = 67/115 (58.26%), Postives = 92/115 (80.00%), Query Frame = 2 
Query:   17 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 361
            K  +K EHP E+R++E  +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
[Close]
BLAST of CX288008 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.386e-35
Identity = 67/115 (58.26%), Postives = 92/115 (80.00%), Query Frame = 2 
Query:   17 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 361
            K  +K EHP E+R++E  +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
[Close]
BLAST of CX288008 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.386e-35
Identity = 67/115 (58.26%), Postives = 92/115 (80.00%), Query Frame = 2 
Query:   17 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 361
            K  +K EHP E+R++E  +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
[Close]
BLAST of CX288008 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.386e-35
Identity = 67/115 (58.26%), Postives = 92/115 (80.00%), Query Frame = 2 
Query:   17 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 361
            K  +K EHP E+R++E  +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
[Close]
BLAST of CX288008 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.088e-35
Identity = 65/115 (56.52%), Postives = 90/115 (78.26%), Query Frame = 2 
Query:   17 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 361
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N++ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVYG 116
[Close]
BLAST of CX288008 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.879e-35
Identity = 65/115 (56.52%), Postives = 89/115 (77.39%), Query Frame = 2 
Query:   17 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 361
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
The following BLAST results are available for this feature:
BLAST of CX288008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL2_MOUSE3.647e-3661.74Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN3.647e-3661.74Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN3.647e-3661.74Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT1.386e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT1.386e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE1.386e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN1.386e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN1.386e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_PONAB3.088e-3556.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENTR6.879e-3556.52Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionC01015G09SK Veg1 Citrus clementina cDNA clone C01015G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288008 ID=CX288008; Name=CX288008; organism=Citrus clementina; type=EST; length=631bp
AGGAGAAGCTATGGCCAAGAGCTCCTTCAAGCTTGAACACCCACTCGAAA
GGAGGCAGGCTGAATCTGCCCGTATCAGGGAGAAGTATCCTGATAGAATA
CCAGTGATTGTGGAGAAGGCTGAAAGGAGTGACATACCTGATATTGACAA
AAAAAAATACCTGGTTCCTGCTGATCTGACTGTTGGACAATTTGTTTATG
TGGTCCGGAAGAGGATAAAGCTCAGTGCTGAGAAGGCCATATTCATATTT
GTCAAGAACATTTTGCCACCCACTGCTGCAATGATGTCTGCAATTTATGA
GGAAAACAAAGATGAGGATGGCTTCCTTTACATGACTTACAGTGGGGAGA
ACACATTCGGGGCATCTTTCTAAGGGAATCAACTGAACTTCTGTAGATTA
ACTCTGAAAAGACTTGATGGAAATATGTAAATCCTTTGCTATTTGCTTTC
AACTGAGGGAGCACTTGGAAAGCATGATCTTCCTGGACGCAGCCCCTTCT
TAAAGTTTGGATCTATTGTTACTCCTCTTTATCTTATTTGTTGCAGTAAA
TATTCGTGATTTCATATTGGATGAGCAAGTTAATACAGGTACTGTTGGAT
TAACTAANAAAAAAAAAAAAAAAAAAAAAAA
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