CX288011

Overview
NameCX288011
Unique NameCX288011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PPE2_HUMAN (Serine/threonine-protein phosphatase with EF-hands 2 OS=Homo sapiens GN=PPEF2 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 66/183 (36.07%), Postives = 99/183 (54.10%), Query Frame = 3
Query:  165 IEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDA----PVTICGDIHGQFYDMKELF-KVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKY--GSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEV 692
            +E  +  + L    V  L  +  + LV+  N+ RV       +T+CGD+HGQ  D+  +F K G   P+ +Y+F GDFVDRG  SVE  ++L A  + YP    L RGNHE   +   YGF  E + KY      + R   D+F +L L+ LI+ K+  +HGG+S  I+ L+ +  I+R + V
Sbjct:  132 VEAFRLKQQLHARYVLNLLYETKKHLVQLPNINRVSTCYSEEITVCGDLHGQLDDLIFIFYKNGLPSPERSYVFNGDFVDRGKDSVEILMILFAFMLVYPKEFHLNRGNHEDHMVNLRYGFTKEVMNKYKVHGKEILRTLQDVFCWLPLATLIDEKVLILHGGVSD-ITDLELLDKIERSKIV 313          
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PPE2_MOUSE (Serine/threonine-protein phosphatase with EF-hands 2 OS=Mus musculus GN=Ppef2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 64/183 (34.97%), Postives = 96/183 (52.46%), Query Frame = 3
Query:  165 IEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDA----PVTICGDIHGQFYDMKELF-KVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKY--GSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEV 692
            +E  +  + L    V  L  +  + L +  N+ RV       VT+CGD+HGQ  D+  +F K G   P+  Y+F GDFVDRG  SVE  ++L A  + YP    L RGNHE   +   YGF  E + KY      + R   D+F +L L+ L++ K+  +HGG+S   + L+ +  +DR + V
Sbjct:  132 VEAFRLRQQLHARYVLNLLYETRKHLAQLPNINRVSTCYSEEVTVCGDLHGQLDDLIFIFYKNGLPSPERAYVFNGDFVDRGKDSVEVLMVLFAFMLVYPKEFHLNRGNHEDHLVNLRYGFTKEVMHKYKIHGKKILRTLQDVFCWLPLATLVDEKVLVLHGGVSDK-TDLELLAKLDRHKIV 313          
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: RDGC_DROME (Serine/threonine-protein phosphatase rdgC OS=Drosophila melanogaster GN=rdgC PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20
Identity = 70/222 (31.53%), Postives = 112/222 (50.45%), Query Frame = 3
Query:  132 IKKEMSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPV----TICGDIHGQFYDMKELFKVGGDCPKTN-YLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKY--GSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVP------HDG---------AMCDLLWSD 731
            I+K   DL   + + K+   L    V  +  +A + L +  N+  V   V    T+CGD+HG+  D+  +    G    +N Y+F GDFVDRG   +E  LLLL+L + +P+ + L RGNHE   +   YGF  E   KY      +  +  +++ +L L +++ +++  VHGG S + S LD I++IDR + V        DG          + D++WSD
Sbjct:  100 IRKNHIDLLIDVFRKKRGNRLHPKYVALILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLHKNGLPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIREVESKYPRNHKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDSTS-LDLIKSIDRGKYVSILRPPLTDGEPLDKTEWQQIFDIMWSD 320          
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PPE1_RAT (Serine/threonine-protein phosphatase with EF-hands 1 OS=Rattus norvegicus GN=Ppef1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 59/183 (32.24%), Postives = 101/183 (55.19%), Query Frame = 3
Query:  147 SDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDA----PVTICGDIHGQFYDMKELF-KVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKY--GSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPA--ISTLDQIR 668
            +D++  ++  K+ + L    V  +  +A +IL +  N  R+       +TICGD+HG+  D+  +F K G    K  Y+F GDFVDRG  S+E  ++LL   + YP  + L RGNHE   +   YGF  E L+KY      + +   +++ +L +  +I+N+I  +HGG+S +  ++ L Q++
Sbjct:  120 TDINLLLQAFKQQQTLHAHYVLEVLFEARKILKQMPNFTRIQTFPAKEITICGDLHGKLDDLMLIFYKNGLPSEKNPYVFNGDFVDRGNNSMEILMILLVSFLVYPTDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGKKILQVLEELYTWLPIGTIIDNEILVIHGGISESTDLNILQQLQ 302          
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PPP7I_ARATH (Serine/threonine-protein phosphatase 7 inactive homolog OS=Arabidopsis thaliana GN=At5g10900 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.818e-19
Identity = 59/192 (30.73%), Postives = 104/192 (54.17%), Query Frame = 3
Query:  228 AMEILVEESNVQRV-----DAPVTICGDIHGQFYDMKELFKVGGDCPKTN--YLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRY--CTDIFDYLSLSALIENKIFSVHGGL-------------SPAISTLDQIRTIDRKQEVPHDG---AMCDLLWS 728
            A +IL +E+N  ++     D+ V + GD+HGQ +D+ ++F   G  P  N  ++F G+++ RG +S+E FL+LLA K+  P+ + L+RG+ E+R   +   F  +   +YG      Y  C D F  L L+++I N +++ HGGL             S  + +L+++  I+R+Q   +D     +  +LWS
Sbjct:  203 ASQILEKEANCVKINGCSEDSRVIVVGDLHGQLHDLLKIFDQSGR-PSQNQCFVFNGNYIGRGSWSLEVFLVLLAWKIMMPENVILLRGSSETRVSAEELDFLKDICDRYGEHGPMLYSKCIDCFKMLPLASVISNSVYTTHGGLFQSCGVHEESPNPSLLLGSLEELDKIERRQAGENDDENITLNHVLWS 393          
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PPE1_MOUSE (Serine/threonine-protein phosphatase with EF-hands 1 OS=Mus musculus GN=Ppef1 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 58/183 (31.69%), Postives = 100/183 (54.64%), Query Frame = 3
Query:  147 SDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDA----PVTICGDIHGQFYDMKELFKVGGDCPKTN-YLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKY--GSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPA--ISTLDQIR 668
            +D+   ++  K+ + L    V  +  +A ++L +  N   V       +TICGD+HG+  D+  +F   G   + N Y+F GDFVDRG  S+E  ++LL   + YP  + L RGNHE   +   YGF  E L+KY      + +   +++ +L +  +I+N+I  +HGG+S +  ++TL Q++
Sbjct:  122 TDIHILLQAFKQQQILHAHYVLEVLFEARKVLKQMPNFSHVKTFPAKEITICGDLHGKLDDLMLIFYKNGLPSENNPYVFNGDFVDRGNNSMEILMILLVCFLVYPSDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGRKILQVLEEVYTWLPIGTIIDNEILVIHGGISESTDLNTLHQLQ 304          
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PPE1_HUMAN (Serine/threonine-protein phosphatase with EF-hands 1 OS=Homo sapiens GN=PPEF1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 56/187 (29.95%), Postives = 98/187 (52.41%), Query Frame = 3
Query:  147 SDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAP----VTICGDIHGQFYDMKELF-KVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKY--GSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQ 686
            +D+D  +E  K+ + L    V  +  +  ++L +  N   +       VTICGD+HG+  D+  +F K G    +  Y+F GDFVDRG  S+E  ++L    + YP+ + L RGNHE   +   YGF  E L KY      + +   + + +L +  +++N+I  +HGG+S   + L+ +  ++R +
Sbjct:  119 TDIDLLLEAFKEQQILHAHYVLEVLFETKKVLKQMPNFTHIQTSPSKEVTICGDLHGKLDDLFLIFYKNGLPSERNPYVFNGDFVDRGKNSIEILMILCVSFLVYPNDLHLNRGNHEDFMMNLRYGFTKEILHKYKLHGKRILQILEEFYAWLPIGTIVDNEILVIHGGISET-TDLNLLHRVERNK 304          
The following BLAST results are available for this feature:
BLAST of CX288011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PPE2_HUMAN1.345e-2236.07Serine/threonine-protein phosphatase with EF-hands... [more]
PPE2_MOUSE3.313e-2134.97Serine/threonine-protein phosphatase with EF-hands... [more]
RDGC_DROME2.804e-2031.53Serine/threonine-protein phosphatase rdgC OS=Droso... [more]
PPE1_RAT4.783e-2032.24Serine/threonine-protein phosphatase with EF-hands... [more]
PPP7I_ARATH1.818e-1930.73Serine/threonine-protein phosphatase 7 inactive ho... [more]
PPE1_MOUSE2.374e-1931.69Serine/threonine-protein phosphatase with EF-hands... [more]
PPE1_HUMAN1.539e-1829.95Serine/threonine-protein phosphatase with EF-hands... [more]

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Properties
Property NameValue
Genbank descriptionC01015G12SK Veg1 Citrus clementina cDNA clone C01015G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288011 ID=CX288011; Name=CX288011; organism=Citrus clementina; type=EST; length=733bp
AAAAGTTTGTAGATGCAGAAGGATTCATTCATTCACGCAGAGTAGGTGAC
AGAGAGACACAAGCCGCGGCTCAAAATCGGGCGAGCATCAGTTAGGTTAG
AGGAACTCAAGTGAAGTGAAGTGAAGGGAAGATAAAAAAAGAGATGTCGG
ATTTAGATAGGCAAATAGAGCAGCTGAAGAAATGCGAGCCGTTGAAAGAG
TCGGAGGTTAAAGCCCTTTGTCTCAAAGCCATGGAAATCCTCGTCGAAGA
AAGCAACGTTCAACGTGTTGACGCCCCTGTCACTATATGCGGTGACATCC
ATGGGCAGTTCTATGACATGAAAGAGCTTTTTAAAGTAGGGGGTGACTGC
CCAAAGACAAATTATTTGTTTCTTGGAGATTTTGTTGACAGAGGATTTTA
CTCCGTCGAGACGTTTCTACTTCTGCTTGCCCTTAAGGTGAGATATCCAG
ATCGGATAACACTCATTAGAGGGAACCATGAAAGTCGTCAGATCACACAG
GTATATGGATTCTATGATGAATGCCTACGTAAATATGGCTCTGTGAATGT
TTGGAGATATTGCACCGATATTTTTGATTATTTAAGTTTGTCTGCTCTCA
TAGAGAACAAGATTTTTAGTGTCCATGGTGGTCTCTCTCCTGCCATCTCA
ACATTGGATCAGATTCGAACAATTGATCGTAAACAAGAAGTACCTCATGA
TGGTGCCATGTGTGACCTTCTGTGGTCAGATCC
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