CX288044
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 395.586 bits (1015), Expect = 1.427e-109 Identity = 192/223 (86.10%), Postives = 203/223 (91.03%), Query Frame = 2 Query: 35 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXEKELANGRLAMLAFLGFIVQH 694 MATVTT ASA++FRPC SK RFLTGSSG+LNR+++ + SSA SFKVEAKKGEWLPGLASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIGIINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP EVGYPGGIFNPLNFAPT EA EKELANGRLAMLAFLGF+VQH Sbjct: 1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQH 223
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 391.349 bits (1004), Expect = 2.691e-108 Identity = 194/222 (87.39%), Postives = 201/222 (90.54%), Query Frame = 2 Query: 35 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXEKELANGRLAMLAFLGFIVQH 694 MATVTTQASAA+F PC KSRFL GSSGKLNR VA +PV S SASFKVEAKKGEWLPGLASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIINVP+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP EVGYPGGIFNPLNFAPT EA EKE+ANGRLAMLAFLGFI+QH Sbjct: 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQH 222
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 4.644e-68 Identity = 133/209 (63.64%), Postives = 152/209 (72.73%), Query Frame = 2 Query: 71 FRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDA-GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXEKELANGRLAMLAFLGFIVQH 694 FR S +GS R+VA++ KG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN RWAMLGV GML+PEV TK G++N P+W GK YFASSST + + YVEIRRWQDIKNPGSVNQDPIFK YSLPP+E GYPG +FNPLNFAP E EKELANGRLAMLAFLGF+VQH Sbjct: 7 FRTRVPPSPAASGSPRSTRRDVAVQA------------KGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAPL-ENKEKELANGRLAMLAFLGFLVQH 201
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 2.094e-52 Identity = 107/215 (49.77%), Postives = 138/215 (64.19%), Query Frame = 2 Query: 83 ASKSRFLTGSSGKLNREVALKPVSSSA----SFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APTDEAXEKELANGRLAMLAFLGFIVQHM 697 A+K+ FL G ++++ +A PV S + + + + W PG P +L+GSLPGD GFDPLGL DPE+LKW QAELV+SRWAMLG G+ +PE TKIG++N P WY AG+ EYF ++TLFVIE +L + E RRW DI PG VN DPIF L +VGYPGG+ F+PL + A E KE+ NGRLAMLA +G QH+ Sbjct: 29 ATKASFLGGKRLRVSKFIA--PVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI 241
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 5.158e-51 Identity = 103/212 (48.58%), Postives = 134/212 (63.21%), Query Frame = 2 Query: 86 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGE--WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APTDEAXEKELANGRLAMLAFLGFIVQHM 697 +K+ FL G ++++ S+ + V A W PG P +L+GSLPGD GFDPLGLA DPE+L+W QAELV+ RWAMLG G+ +PE+ TKIGI+N P WY AG+ EYF ++TLF++E +L + E RRW DI PG VN DPIF L +VGYPGG+ F+PL + A E KE+ NGRLAMLA +G QH+ Sbjct: 30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI 241
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.254e-29 Identity = 91/247 (36.84%), Postives = 129/247 (52.23%), Query Frame = 2 Query: 38 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 ++++T A AA + S+ +T + + R + PV A+ ++ W S +YL+G LPGD GFDPLGL+ DPE KW E++N R+AMLG G + PE+ K G+I PQ W+ AG Y+A + TLFV+E L + E RR+QD PGS+ KQY L + YPGG +FNPL F +++ + KE+ NGRLAMLA LG+ +Q Sbjct: 10 SSISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQL------WFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQ 242
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.236e-28 Identity = 95/253 (37.55%), Postives = 123/253 (48.62%), Query Frame = 2 Query: 20 LSSGNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 L S + T +A FR + S G L R A PV + W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG VG + PE K+G+I PQ W+ AG Y+A + TLFV+E L + E RR+QD PGS+ KQY L YPGG FNPL F +++ + KE+ NGRLAMLA LG+ +Q Sbjct: 6 LVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKG-LVRAAATPPVKQGG-----VDRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQ 244
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.850e-25 Identity = 71/179 (39.66%), Postives = 98/179 (54.75%), Query Frame = 2 Query: 191 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAXEKELANGRLAMLAFLGFIVQ 691 EW PG P +L+GS PGD GFDPLGLA PEN + + ++E+ + RWAML V G+L+PE + +W G+A Y + + T+ IEF+ + E +R ++ +DP K+ YPGG F+PL F A +E KE+ NGRLAMLAF+GF VQ Sbjct: 47 EWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TMEKDPEKKK---------YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQ 208
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25 Identity = 69/179 (38.55%), Postives = 99/179 (55.31%), Query Frame = 2 Query: 191 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAXEKELANGRLAMLAFLGFIVQ 691 +W+PG P+YL+GS PGD GFD LGL E P NL+ Y ++EL++ RWAML V G+++PE + +W G+A Y + + T+ IEF+ +VE +R S+ +D K+ YPGG F+PL + A +E KE+ NGRLA+LA +GF VQ Sbjct: 48 DWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKDSEKKK---------YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQ 209
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24 Identity = 74/197 (37.56%), Postives = 104/197 (52.79%), Query Frame = 2 Query: 179 AKKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA---------PTDEAXEK----ELANGRLAMLAFLGF 682 A K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAML V+G+ + + +T I W++AG A S TL + +L +VE +RW D +P S + + + +S E GYPGG F+PL+ A P + E+ E+ + RLAMLA L F Sbjct: 55 APKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIF 245 The following BLAST results are available for this feature:
BLAST of CX288044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288044 ID=CX288044; Name=CX288044; organism=Citrus clementina; type=EST; length=725bpback to top |