CX288044
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17 Identity = 62/170 (36.47%), Postives = 86/170 (50.59%), Query Frame = 2 Query: 212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTD----EAXEKELANGRLAMLAFLGFIVQ 691 +P+YLNG GD G+D GL+ DPE + E++++RWAMLG +G L PE+ K G+ W+ AG A+ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A E KE+ NGRLAM + GF VQ Sbjct: 68 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQ 233
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17 Identity = 70/223 (31.39%), Postives = 100/223 (44.84%), Query Frame = 2 Query: 83 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP----TDEAXEKELANGRLAMLAFLGFIVQ 691 A S L G+ R+ PVS S + + K +P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S +++ + IL VE ++ P DP+ YPGG F+PL A + E KEL NGRLAM + GF VQ Sbjct: 21 APSSSELFGNGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVE--GYRVAGGPLGEIVDPL------------YPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQ 229
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17 Identity = 61/179 (34.08%), Postives = 84/179 (46.93%), Query Frame = 2 Query: 215 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S ++ + IL VE ++ P DPI YPGG F+PL A EA KE+ NGRLAM + GF VQ Sbjct: 46 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 210
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17 Identity = 61/172 (35.47%), Postives = 87/172 (50.58%), Query Frame = 2 Query: 212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIV 688 SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+ W+ AG ++ F+ ++ L H I W + G+V + Y + +G YPGG F+PL A EA KEL NGRLAM + GF V Sbjct: 28 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFV 192
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17 Identity = 59/179 (32.96%), Postives = 85/179 (47.49%), Query Frame = 2 Query: 215 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S ++ ++ +L VE ++ P DP+ YPGG F+PL A EA KE+ NGRLAM + GF VQ Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVE--GYRIAGGPLGEVVDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 226
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17 Identity = 59/179 (32.96%), Postives = 84/179 (46.93%), Query Frame = 2 Query: 215 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+ W+ AG +Y + + ++ + +L +VE R P DPI YPGG F+PL A +A KE+ NGRLAM + GF VQ Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDPI------------YPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQ 230
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17 Identity = 61/170 (35.88%), Postives = 86/170 (50.59%), Query Frame = 2 Query: 212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA KE+ NGRLAM + GF VQ Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17 Identity = 60/173 (34.68%), Postives = 86/173 (49.71%), Query Frame = 2 Query: 212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I W + G+V + Y + +G YPGG F+PL A EA KE+ NGRLAM + GF VQ Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17 Identity = 60/169 (35.50%), Postives = 86/169 (50.89%), Query Frame = 2 Query: 215 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I W + G++ ++ P EV YPGG F+PL A +A KE+ NGRLAM + GF VQ Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQ 243
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17 Identity = 60/169 (35.50%), Postives = 86/169 (50.89%), Query Frame = 2 Query: 215 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I W + G++ ++ P EV YPGG F+PL A +A KE+ NGRLAM + GF VQ Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQ 243 The following BLAST results are available for this feature:
BLAST of CX288044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288044 ID=CX288044; Name=CX288044; organism=Citrus clementina; type=EST; length=725bpback to top |