CX288044

Overview
NameCX288044
Unique NameCX288044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 62/170 (36.47%), Postives = 86/170 (50.59%), Query Frame = 2
Query:  212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTD----EAXEKELANGRLAMLAFLGFIVQ 691
            +P+YLNG   GD G+D  GL+ DPE      + E++++RWAMLG +G L PE+  K G+      W+ AG A+ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A       E   KE+ NGRLAM +  GF VQ
Sbjct:   68 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQ 233          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 70/223 (31.39%), Postives = 100/223 (44.84%), Query Frame = 2
Query:   83 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP----TDEAXEKELANGRLAMLAFLGFIVQ 691
            A  S  L G+     R+    PVS S  +  +  K        +P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S        +++  + IL   VE   ++    P     DP+            YPGG F+PL  A     + E   KEL NGRLAM +  GF VQ
Sbjct:   21 APSSSELFGNGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVE--GYRVAGGPLGEIVDPL------------YPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQ 229          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 61/179 (34.08%), Postives = 84/179 (46.93%), Query Frame = 2
Query:  215 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A   EA      KE+ NGRLAM +  GF VQ
Sbjct:   46 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 210          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 61/172 (35.47%), Postives = 87/172 (50.58%), Query Frame = 2
Query:  212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIV 688
            SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A   EA      KEL NGRLAM +  GF V
Sbjct:   28 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFV 192          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 59/179 (32.96%), Postives = 85/179 (47.49%), Query Frame = 2
Query:  215 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++ ++ +L   VE   ++    P     DP+            YPGG F+PL  A   EA      KE+ NGRLAM +  GF VQ
Sbjct:   62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVE--GYRIAGGPLGEVVDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 226          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 59/179 (32.96%), Postives = 84/179 (46.93%), Query Frame = 2
Query:  215 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+ +K G+      W+ AG         +Y  + +         ++  + +L  +VE  R      P     DPI            YPGG F+PL  A   +A      KE+ NGRLAM +  GF VQ
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDPI------------YPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQ 230          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 61/170 (35.88%), Postives = 86/170 (50.59%), Query Frame = 2
Query:  212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA      KE+ NGRLAM +  GF VQ
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 60/173 (34.68%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A   EA      KE+ NGRLAM +  GF VQ
Sbjct:   65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 60/169 (35.50%), Postives = 86/169 (50.89%), Query Frame = 2
Query:  215 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG A+ F+     ++    L H   I   W   +   G++     ++    P  EV    YPGG F+PL  A   +A      KE+ NGRLAM +  GF VQ
Sbjct:   79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQ 243          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 60/169 (35.50%), Postives = 86/169 (50.89%), Query Frame = 2
Query:  215 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG A+ F+     ++    L H   I   W   +   G++     ++    P  EV    YPGG F+PL  A   +A      KE+ NGRLAM +  GF VQ
Sbjct:   79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQ 243          
The following BLAST results are available for this feature:
BLAST of CX288044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB2_PHYPA2.857e-1736.47Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_APIGR2.857e-1731.39Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN2.857e-1734.08Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PEA2.857e-1735.47Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_ORYSJ3.731e-1732.96Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_GOSHI3.731e-1732.96Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB24_TOBAC4.873e-1735.88Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB2B_SOLLC6.365e-1734.68Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_PYRPY6.365e-1735.50Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY6.365e-1735.50Chlorophyll a-b binding protein type 2 member 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionC01016B10SK Veg1 Citrus clementina cDNA clone C01016B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288044 ID=CX288044; Name=CX288044; organism=Citrus clementina; type=EST; length=725bp
TGCACTACGAGGCTCATAACTCTCGTCGGGAAACATGGCAACCGTCACAA
CACAAGCCTCGGCCGCCGTGTTCCGGCCATGCGCATCCAAATCCAGGTTC
CTTACTGGGTCTTCGGGTAAATTAAATAGGGAAGTGGCCTTGAAACCAGT
GAGCTCAAGCGCTTCTTTCAAAGTTGAAGCCAAGAAGGGGGAGTGGTTAC
CGGGCTTGGCCTCACCAACTTACCTCAACGGCAGCCTCCCCGGTGACAAT
GGATTTGACCCCTTGGGGCTTGCCGAGGATCCTGAGAACTTGAAGTGGTA
TGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTTGGGTGTTGTTG
GAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAATGTTCCT
CAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATCGACCCT
TTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAAGATGGC
AAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTCAAGCAG
TACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTTCAACCC
ACTCAACTTTGCACCCACTGATGAGGCANAGGAGAAGGAGCTTGCCAATG
GGAGATTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCACATGTGA
CAGGCAAGGGCCATTTGAAACCTCT
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