CX288044

Overview
NameCX288044
Unique NameCX288044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 72/224 (32.14%), Postives = 109/224 (48.66%), Query Frame = 2
Query:   62 AAVFRPCASKSRFLTGSSGKLNREVALK--PVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            A  F P +S+   +TG+     R+   K  PVSS + +     + ++L   +  +P+YL G  PGD G+D   L+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA      KE+ NGRLAM +  GF VQ
Sbjct:   17 AVKFSPSSSE---ITGNGKATMRKTVTKAKPVSSGSPW-YGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 59/170 (34.71%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEV---GYPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            +P+YL G  PGD G+D  GL+ DP       + E+++ RW MLG +G + PE+F + G+      W+ AG ++ F      ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA      KE+ NGRLAM +  GF VQ
Sbjct:   66 APSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAG-SQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQ 231          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 65/182 (35.71%), Postives = 85/182 (46.70%), Query Frame = 2
Query:  212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGK-------AEYFA------SSSTLFVIEF--ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PTD--EAXEKELANGRLAMLAFLGFIVQ 691
            +P+YLNG  PGD G+D  GL+ DPE        E+++ RWAMLG +G + PEV  K   ++   P W+ AG         +Y        + S L V+ F  +L   VE  R   +   G  N                YPGG  F+PL  A  PT   E   KE+ NGRLAM +  GF VQ
Sbjct:   63 TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND--------------LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQ 230          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 67/217 (30.88%), Postives = 89/217 (41.01%), Query Frame = 2
Query:  107 GSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK---IGIINVPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAXEKELANGRLAMLAFLGFIVQ 691
            G S K   +   K  SS+  F        W      P    G  PGD G+D  GL+ DPE  K Y + EL+++R  +LG +GM+ PE+      I   +   W+ AG A        Y  + S +          ++ +L   VE  R      P     DP+            YPG  F+PL  A       E   KE+ NGRLAM A LGF VQ
Sbjct:   37 GKSTKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNG--GPAGEGLDPL------------YPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQ 239          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 78/279 (27.96%), Postives = 110/279 (39.43%), Query Frame = 2
Query:   35 MATVTTQASAAVFRPCASKSRFLTGSSGKLNR-EVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW-------------------------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASS-----------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PTDEAXEK--ELANGRLAMLAFLGFIVQ 691
            MA  +T A+A+        S   + SS    R     K  S   +  V + +  W PG  SP YL+GSL GD GFDP GL +  E L++                                           + + EL++ RWAML  +G +  E  T +       W DAGK E    S           STL  IE ++  Y+E +R  ++ +   +                 YPGG  F+PL  A  P  +A  +  E+ + RLAM+ FLGF VQ
Sbjct:    1 MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQ 256          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 62/211 (29.38%), Postives = 95/211 (45.02%), Query Frame = 2
Query:   35 MATVTTQASA----AVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA 628
            MAT T Q SA     + +P     R + G+ G+++    +K    S  +  +  K        +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  K G+      W+ AG ++ F      ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A   EA
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAG-SQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAV------EGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEA 204          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 54/172 (31.40%), Postives = 78/172 (45.35%), Query Frame = 2
Query:  182 KKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXEKELANGRLAMLAFLGFIVQHM 697
            K G W PG   P +L G  P D GFDPL +A DP        +E+ ++R +ML +VG ++PE+  K        W++ G      +S     + FIL        +   +  G  N D      S       YPG  F+PL    T +  ++E+ NGRLAM   LG   Q++
Sbjct:  158 KDGVWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVG------NSVDGIKLGFILMAIAAPTEYW--RGNGGFNWDKGTADRS-------YPG--FDPLKL--TTDYTKREIKNGRLAMTGLLGLTFQYL 304          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 57/180 (31.67%), Postives = 79/180 (43.89%), Query Frame = 2
Query:  212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            +P+YL G   G        L+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A   EA      KEL NGRLAM +  GF VQ
Sbjct:   64 APSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQ 221          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 58/175 (33.14%), Postives = 81/175 (46.29%), Query Frame = 2
Query:  188 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            GEW      P+YL G  PGD G+D  GL+  PE      + E+++SR AM   +G + PE+ + +G       W+ AG A+ F+     ++    L H   I   W   +   G+V    I +       +  YPG  F+ L  A   EA      KEL NGRLAM +  GF VQ
Sbjct:   67 GEW------PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQ 233          
The following BLAST results are available for this feature:
BLAST of CX288044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB25_PETSP4.125e-1632.14Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_PETSP9.190e-1634.71Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_SOLLC2.047e-1535.71Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNSA5.957e-1530.88Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB4B_ARATH2.264e-1427.96Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB21_SILPR3.269e-1329.38Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
LH15_EUGGR1.622e-1231.40Light-harvesting complex I LH35 proteins (Fragment... [more]
CB22_SOYBN8.051e-1231.67Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_MALDO3.996e-1133.14Chlorophyll a-b binding protein AB10, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionC01016B10SK Veg1 Citrus clementina cDNA clone C01016B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288044 ID=CX288044; Name=CX288044; organism=Citrus clementina; type=EST; length=725bp
TGCACTACGAGGCTCATAACTCTCGTCGGGAAACATGGCAACCGTCACAA
CACAAGCCTCGGCCGCCGTGTTCCGGCCATGCGCATCCAAATCCAGGTTC
CTTACTGGGTCTTCGGGTAAATTAAATAGGGAAGTGGCCTTGAAACCAGT
GAGCTCAAGCGCTTCTTTCAAAGTTGAAGCCAAGAAGGGGGAGTGGTTAC
CGGGCTTGGCCTCACCAACTTACCTCAACGGCAGCCTCCCCGGTGACAAT
GGATTTGACCCCTTGGGGCTTGCCGAGGATCCTGAGAACTTGAAGTGGTA
TGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTTGGGTGTTGTTG
GAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAATGTTCCT
CAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATCGACCCT
TTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAAGATGGC
AAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTCAAGCAG
TACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTTCAACCC
ACTCAACTTTGCACCCACTGATGAGGCANAGGAGAAGGAGCTTGCCAATG
GGAGATTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCACATGTGA
CAGGCAAGGGCCATTTGAAACCTCT
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