CX288044
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16 Identity = 72/224 (32.14%), Postives = 109/224 (48.66%), Query Frame = 2 Query: 62 AAVFRPCASKSRFLTGSSGKLNREVALK--PVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 A F P +S+ +TG+ R+ K PVSS + + + ++L + +P+YL G PGD G+D L+ DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA KE+ NGRLAM + GF VQ Sbjct: 17 AVKFSPSSSE---ITGNGKATMRKTVTKAKPVSSGSPW-YGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16 Identity = 59/170 (34.71%), Postives = 84/170 (49.41%), Query Frame = 2 Query: 212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEV---GYPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 +P+YL G PGD G+D GL+ DP + E+++ RW MLG +G + PE+F + G+ W+ AG ++ F ++ L H I W + G+V ++ P EV YPGG F+PL A EA KE+ NGRLAM + GF VQ Sbjct: 66 APSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAG-SQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQ 231
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15 Identity = 65/182 (35.71%), Postives = 85/182 (46.70%), Query Frame = 2 Query: 212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGK-------AEYFA------SSSTLFVIEF--ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PTD--EAXEKELANGRLAMLAFLGFIVQ 691 +P+YLNG PGD G+D GL+ DPE E+++ RWAMLG +G + PEV K ++ P W+ AG +Y + S L V+ F +L VE R + G N YPGG F+PL A PT E KE+ NGRLAM + GF VQ Sbjct: 63 TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND--------------LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQ 230
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15 Identity = 67/217 (30.88%), Postives = 89/217 (41.01%), Query Frame = 2 Query: 107 GSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK---IGIINVPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAXEKELANGRLAMLAFLGFIVQ 691 G S K + K SS+ F W P G PGD G+D GL+ DPE K Y + EL+++R +LG +GM+ PE+ I + W+ AG A Y + S + ++ +L VE R P DP+ YPG F+PL A E KE+ NGRLAM A LGF VQ Sbjct: 37 GKSTKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNG--GPAGEGLDPL------------YPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQ 239
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14 Identity = 78/279 (27.96%), Postives = 110/279 (39.43%), Query Frame = 2 Query: 35 MATVTTQASAAVFRPCASKSRFLTGSSGKLNR-EVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW-------------------------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASS-----------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PTDEAXEK--ELANGRLAMLAFLGFIVQ 691 MA +T A+A+ S + SS R K S + V + + W PG SP YL+GSL GD GFDP GL + E L++ + + EL++ RWAML +G + E T + W DAGK E S STL IE ++ Y+E +R ++ + + YPGG F+PL A P +A + E+ + RLAM+ FLGF VQ Sbjct: 1 MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQ 256
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13 Identity = 62/211 (29.38%), Postives = 95/211 (45.02%), Query Frame = 2 Query: 35 MATVTTQASA----AVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA 628 MAT T Q SA + +P R + G+ G+++ +K S + + K +P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ K G+ W+ AG ++ F ++ L H I W + G+V + Y + +G YPGG F+PL A EA Sbjct: 1 MATSTIQQSAFAGQTLLKPQNELVRKVGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAG-SQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAV------EGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEA 204
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12 Identity = 54/172 (31.40%), Postives = 78/172 (45.35%), Query Frame = 2 Query: 182 KKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXEKELANGRLAMLAFLGFIVQHM 697 K G W PG P +L G P D GFDPL +A DP +E+ ++R +ML +VG ++PE+ K W++ G +S + FIL + + G N D S YPG F+PL T + ++E+ NGRLAM LG Q++ Sbjct: 158 KDGVWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVG------NSVDGIKLGFILMAIAAPTEYW--RGNGGFNWDKGTADRS-------YPG--FDPLKL--TTDYTKREIKNGRLAMTGLLGLTFQYL 304
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12 Identity = 57/180 (31.67%), Postives = 79/180 (43.89%), Query Frame = 2 Query: 212 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 +P+YL G G L+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S ++ + IL VE ++ P DPI YPGG F+PL A EA KEL NGRLAM + GF VQ Sbjct: 64 APSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQ 221
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11 Identity = 58/175 (33.14%), Postives = 81/175 (46.29%), Query Frame = 2 Query: 188 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691 GEW P+YL G PGD G+D GL+ PE + E+++SR AM +G + PE+ + +G W+ AG A+ F+ ++ L H I W + G+V I + + YPG F+ L A EA KEL NGRLAM + GF VQ Sbjct: 67 GEW------PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQ 233 The following BLAST results are available for this feature:
BLAST of CX288044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288044 ID=CX288044; Name=CX288044; organism=Citrus clementina; type=EST; length=725bpback to top |