CX288052

Overview
NameCX288052
Unique NameCX288052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_AJECN (Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.161e-28
Identity = 63/120 (52.50%), Postives = 88/120 (73.33%), Query Frame = -1
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 677
            VHK++ TDDK+LQ++LK++ V  I AIEEVN+FK+D  VI F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q  Q    G  A    +DDDDE+P+LV
Sbjct:   29 VHKSSGTDDKKLQTSLKKLNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKGEGGEDAKKDDDDDDDEIPDLV 148          
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_ASPTN (Nascent polypeptide-associated complex subunit beta OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=egd1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.595e-27
Identity = 60/119 (50.42%), Postives = 90/119 (75.63%), Query Frame = -1
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VHK++  DDK+LQ+TLK++ V  IPA+EEVN+FK+D  VI F NP+V AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N   GA   ++D++D++P+LV
Sbjct:   40 VHKSSGADDKKLQATLKKMNVQPIPAVEEVNMFKEDGNVIHFGNPRVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGAEGKKDDEEDDIPDLV 157          
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_COCIM (Nascent polypeptide-associated complex subunit beta OS=Coccidioides immitis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.917e-27
Identity = 61/119 (51.26%), Postives = 88/119 (73.95%), Query Frame = -1
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VHK++ TDDK+LQ++LK++ V  I AIEEVN+FK+D  VI F  PKVQAS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G  A    E+DD+++P+LV
Sbjct:   29 VHKSSGTDDKKLQTSLKKLNVQPIQAIEEVNMFKEDGNVIHFAAPKVQASVPSNTFAIYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKKEGE-AKKEGEEDDEDIPDLV 146          
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_ASPOR (Nascent polypeptide-associated complex subunit beta OS=Aspergillus oryzae GN=egd1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.350e-26
Identity = 61/119 (51.26%), Postives = 88/119 (73.95%), Query Frame = -1
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VHK++  DDK+LQ+TLK++ V  I AIEEVN+FK+D  VI F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N   GA   ++DD+D++P+LV
Sbjct:   69 VHKSSGADDKKLQATLKKMNVQPIQAIEEVNMFKEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGAEGKKDDDEDDIPDLV 186          
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_NEOFI (Nascent polypeptide-associated complex subunit beta OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=egd1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.764e-26
Identity = 60/119 (50.42%), Postives = 88/119 (73.95%), Query Frame = -1
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VHK++  DDK+LQ+TLK++ V  I AIEEVN+FK+D  VI F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q     AGT     +++D+D++P+LV
Sbjct:   57 VHKSSGADDKKLQTTLKKMNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKQAGTEG--KKDEDEDDIPDLV 173          
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_SCLS1 (Nascent polypeptide-associated complex subunit beta OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=egd1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.303e-26
Identity = 59/119 (49.58%), Postives = 84/119 (70.59%), Query Frame = -1
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VHK+T  DDK+LQ++LK++ V  I AIEEVN+FK D  VI F  PKV A++ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G       E+DDD++P+LV
Sbjct:   31 VHKSTGMDDKKLQTSLKKLNVQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKAEGGEEKKDDEEDDDDIPDLV 149          
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_PHANO (Nascent polypeptide-associated complex subunit beta OS=Phaeosphaeria nodorum GN=EGD1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = -1
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED--DDDEVPELV 677
            VHK++ TDDK+LQ+ LK++ V  I AIEEVN+FK D  VI F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G       +D  DDD++PELV
Sbjct:   28 VHKSSGTDDKKLQTALKKLNVQPIQAIEEVNMFKSDGNVIHFSAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKEKGEDGDKKDDDDEDDDDIPELV 148          
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_ASPFU (Nascent polypeptide-associated complex subunit beta OS=Aspergillus fumigatus GN=egd1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 60/119 (50.42%), Postives = 88/119 (73.95%), Query Frame = -1
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VHK++  DDK+LQ+TLK++ V  I AIEEVN+FK+D  VI F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q     A  GA   +++D+D++P+LV
Sbjct:   60 VHKSSGADDKKLQTTLKKMNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKQA--GAEGKKDEDEDDIPDLV 176          
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_ASPNC (Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=egd1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 60/119 (50.42%), Postives = 88/119 (73.95%), Query Frame = -1
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VHK++  DDK+LQ+TLK++ V  I AIEEVN+FK+D  VI F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N   GA   ++D++D++P+LV
Sbjct:   28 VHKSSGADDKKLQATLKKMNVQPIQAIEEVNMFKEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGADGKKDDEEDDIPDLV 145          
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_BOTFB (Nascent polypeptide-associated complex subunit beta OS=Botryotinia fuckeliana (strain B05.10) GN=egd1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.702e-26
Identity = 58/119 (48.74%), Postives = 84/119 (70.59%), Query Frame = -1
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VHK+T  DDK+LQ++LK++ V  I AIEEVN+FK D  VI F  PKV A++ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G       ++DDD++P+LV
Sbjct:   31 VHKSTGMDDKKLQTSLKKLNVQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKAEGGEDKKDDDEDDDDIPDLV 149          
The following BLAST results are available for this feature:
BLAST of CX288052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_AJECN7.161e-2852.50Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPTN1.595e-2750.42Nascent polypeptide-associated complex subunit bet... [more]
NACB_COCIM7.917e-2751.26Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPOR1.350e-2651.26Nascent polypeptide-associated complex subunit bet... [more]
NACB_NEOFI1.764e-2650.42Nascent polypeptide-associated complex subunit bet... [more]
NACB_SCLS12.303e-2649.58Nascent polypeptide-associated complex subunit bet... [more]
NACB_PHANO3.008e-2650.41Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPFU3.008e-2650.42Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPNC3.929e-2650.42Nascent polypeptide-associated complex subunit bet... [more]
NACB_BOTFB6.702e-2648.74Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionC01016C06SK Veg1 Citrus clementina cDNA clone C01016C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288052 ID=CX288052; Name=CX288052; organism=Citrus clementina; type=EST; length=680bp
AATTCGGCACGAGGGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTGAAAG
CCATTGCAACAGTGCCTCCGGATTCTGAAAGAGTAAAAGGGTTTTCACTG
GTTTCACTGGAGCAAAACATTGAATTAAAAAGTAACAATATCTAGTGTCA
CAGGGAGAATCAGATAAAACAAGAGAAAGTTGACTCGGAAAAGTAAAATA
AAAACTCAAAAAACATAGAAAATATATAGAATAACACAAAGTCCCTCTAG
ATAAAACTCTCTAAGAAGCAGCGTCAGGTTTCTCTGTTTTCTCCTCTGCG
GCAGCTTCAAACGTCTCGCCTGCCACAAGCTCTGGGACCTCATCGTCGTC
GTCCTCTTGAGTCGTGGGTGCACCAGTTCCTGCATTAGGTGCTTGCTTCT
GAAACTGCTCCGCCAACTTCCTCAGGTTGTCCAAATTATCTGGCCCCAAT
TGATTGATAATTCCAGGGAGAATATCCTGCAACTTCTTGGTTTGTGGGGC
ACCACTAACTACCCATGTGTTGGCAGCAATTGAAGCTTGTACTTTGGGAT
TTAAGAACTGAATAACGACGTCATCCTTGAAAATGTTAACTTCCTCAATT
GCAGGAATAGCATTCACTCCTATTCTCTTCAAGGTGCTCTGAAGCCTCTT
GTCATCGGTGGTTGTTGTCTTATGAACAGC
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