CX288052

Overview
NameCX288052
Unique NameCX288052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_KLULA (Nascent polypeptide-associated complex subunit beta OS=Kluyveromyces lactis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = -1
Query:  324 TTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 668
            +++ DD +LQ  L+++    +  +++ N FKDD  V+ F    VQ +   NT V  G PQ K LQ++ P II Q+G D ++ L ++A Q Q  Q  N    AP   E  D ++PELV
Sbjct:   33 SSSKDDSKLQDQLQKLRAVTVDNVQQANFFKDDGTVLHFNKVGVQVAPQHNTSVFYGIPQEKSLQELFPDIIPQMGADAINALTQMASQLQSAQGANQQAAAPEA-EGKDIDIPELV 148          
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_CANGA (Nascent polypeptide-associated complex subunit beta OS=Candida glabrata GN=EGD1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = -1
Query:  324 DDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 656
            DD +L + L ++    I  + E N FKDD  V+ F    VQ +   NT V  G  Q K LQ++ PGII+QLG + +  L +LA Q +K   N   G     E  D+ +PELV
Sbjct:   40 DDTKLHNQLAKLHAVTIDNVAEANFFKDDGKVLHFNKVGVQVAPQHNTSVFYGMAQEKNLQELFPGIISQLGGEAIQALSQLAAQMEKAQANENAG-----EAKDEAIPELV 146          
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: NACB_PICGU (Nascent polypeptide-associated complex subunit beta OS=Pichia guilliermondii GN=EGD1 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 39/113 (34.51%), Postives = 63/113 (55.75%), Query Frame = -1
Query:  324 DDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 656
            DD +L   L ++    + A+EE N FK+D  V+ F    VQ++   N    +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  + P+ G          D+++P+L+
Sbjct:   34 DDTKLMEALGKLKATKVNAVEEANFFKEDGKVLHFKRVGVQSAAQHNVCAFTGYPQEKDVTQLIPQILPQLGAENLEILRQLAEQIQAGKTPSMG----GENAGADEDIPDLI 142          
The following BLAST results are available for this feature:
BLAST of CX288052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_KLULA1.893e-1236.75Nascent polypeptide-associated complex subunit bet... [more]
NACB_CANGA2.093e-1138.39Nascent polypeptide-associated complex subunit bet... [more]
NACB_PICGU6.090e-1134.51Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionC01016C06SK Veg1 Citrus clementina cDNA clone C01016C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288052 ID=CX288052; Name=CX288052; organism=Citrus clementina; type=EST; length=680bp
AATTCGGCACGAGGGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTGAAAG
CCATTGCAACAGTGCCTCCGGATTCTGAAAGAGTAAAAGGGTTTTCACTG
GTTTCACTGGAGCAAAACATTGAATTAAAAAGTAACAATATCTAGTGTCA
CAGGGAGAATCAGATAAAACAAGAGAAAGTTGACTCGGAAAAGTAAAATA
AAAACTCAAAAAACATAGAAAATATATAGAATAACACAAAGTCCCTCTAG
ATAAAACTCTCTAAGAAGCAGCGTCAGGTTTCTCTGTTTTCTCCTCTGCG
GCAGCTTCAAACGTCTCGCCTGCCACAAGCTCTGGGACCTCATCGTCGTC
GTCCTCTTGAGTCGTGGGTGCACCAGTTCCTGCATTAGGTGCTTGCTTCT
GAAACTGCTCCGCCAACTTCCTCAGGTTGTCCAAATTATCTGGCCCCAAT
TGATTGATAATTCCAGGGAGAATATCCTGCAACTTCTTGGTTTGTGGGGC
ACCACTAACTACCCATGTGTTGGCAGCAATTGAAGCTTGTACTTTGGGAT
TTAAGAACTGAATAACGACGTCATCCTTGAAAATGTTAACTTCCTCAATT
GCAGGAATAGCATTCACTCCTATTCTCTTCAAGGTGCTCTGAAGCCTCTT
GTCATCGGTGGTTGTTGTCTTATGAACAGC
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