CX288067

Overview
NameCX288067
Unique NameCX288067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.994e-58
Identity = 115/126 (91.27%), Postives = 120/126 (95.24%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRK +ATKA RK+AP  GGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKAVATKA-RKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 125
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H33_LODEL (Histone H3.3 OS=Lodderomyces elongisporus GN=HHT3 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.994e-58
Identity = 113/126 (89.68%), Postives = 120/126 (95.24%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H31_PICST (Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.994e-58
Identity = 113/126 (89.68%), Postives = 120/126 (95.24%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H31_PICGU (Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.994e-58
Identity = 113/126 (89.68%), Postives = 120/126 (95.24%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H31_DEBHA (Histone H3.1/H3.2 OS=Debaryomyces hansenii GN=HHT1 PE=3 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 4.994e-58
Identity = 113/126 (89.68%), Postives = 120/126 (95.24%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H33_SCHPO (Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 6.523e-58
Identity = 113/126 (89.68%), Postives = 118/126 (93.65%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP TGGVKKPHRYRP TVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+Q
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPPTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H33_PICGU (Histone H3.3 OS=Pichia guilliermondii GN=HHT3 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.519e-58
Identity = 113/126 (89.68%), Postives = 119/126 (94.44%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQEA EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H3_TRIRE (Histone H3 OS=Trichoderma reesei GN=HHT1 PE=3 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.113e-57
Identity = 112/126 (88.89%), Postives = 120/126 (95.24%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ E+YLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H3_PENFN (Histone H3 OS=Penicillium funiculosum GN=HHT1 PE=3 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.113e-57
Identity = 112/126 (88.89%), Postives = 120/126 (95.24%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H3_NEUCR (Histone H3 OS=Neurospora crassa GN=hh3 PE=1 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 1.113e-57
Identity = 112/126 (88.89%), Postives = 120/126 (95.24%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ E+YLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126
The following BLAST results are available for this feature:
BLAST of CX288067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_MASBA4.994e-5891.27Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1[more]
H33_LODEL4.994e-5889.68Histone H3.3 OS=Lodderomyces elongisporus GN=HHT3 ... [more]
H31_PICST4.994e-5889.68Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 ... [more]
H31_PICGU4.994e-5889.68Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1... [more]
H31_DEBHA4.994e-5889.68Histone H3.1/H3.2 OS=Debaryomyces hansenii GN=HHT1... [more]
H33_SCHPO6.523e-5889.68Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 ... [more]
H33_PICGU8.519e-5889.68Histone H3.3 OS=Pichia guilliermondii GN=HHT3 PE=3... [more]
H3_TRIRE1.113e-5788.89Histone H3 OS=Trichoderma reesei GN=HHT1 PE=3 SV=2[more]
H3_PENFN1.113e-5788.89Histone H3 OS=Penicillium funiculosum GN=HHT1 PE=3... [more]
H3_NEUCR1.113e-5788.89Histone H3 OS=Neurospora crassa GN=hh3 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC01016D09SK Veg1 Citrus clementina cDNA clone C01016D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288067 ID=CX288067; Name=CX288067; organism=Citrus clementina; type=EST; length=675bp
GAAGAGTTGAAGAAACTCAGAGATGGCCCGTACCAAGCAAACTGCACGTA
AGTCAACCGGAGGAAAGGCTCCTAGGAAGCAACTTGCTACCAAGGCCGCC
CGTAAGTCTGCGCCCACCACCGGTGGTGTTAAGAAGCCTCATCGTTACCG
TCCTGGAACCGTCGCCCTTCGAGAAATTCGCAAGTACCAGAAGAGTACCG
AGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGTTCGTGAAATTGCT
CAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATGCAGTACTGGCCCT
GCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTCGAGGACACTAACC
TCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCCCAAGGACATACAG
CTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCGTAATTGCTGCTTGC
TTCAATTGAATGACTGGAAGGGAAGGGGGAAGTTGTAATGTGTTAATTTG
TACGTGGGGGTTGGTGGGGGTAGATAGGGGTAGGATTCCAGTNGTTATTA
GAATATGGCTTTTGTCATCATCTGGGTTTGTTTTTGGTGGTGTTTTATAA
TGTCTATTTGTTGATGATGGGGATTTTAATTCGCCATAAGAGACTGGCTT
TTATGTGTTCTTTTGGATACCTGTT
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