CX288067

Overview
NameCX288067
Unique NameCX288067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H3_ASPCL (Histone H3 OS=Aspergillus clavatus GN=hht1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.113e-57
Identity = 112/126 (88.89%), Postives = 120/126 (95.24%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H33_CANAL (Histone H3.3 OS=Candida albicans GN=HHT3 PE=3 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 1.113e-57
Identity = 112/126 (88.89%), Postives = 120/126 (95.24%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KD+Q
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H31_TETTH (Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.898e-57
Identity = 111/126 (88.10%), Postives = 120/126 (95.24%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVR+IA +FK +LRFQS AVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIM KD+Q
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H31_TETPY (Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.898e-57
Identity = 111/126 (88.10%), Postives = 120/126 (95.24%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVR+IA +FK +LRFQS AVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIM KD+Q
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H3_COCIM (Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.479e-57
Identity = 111/126 (88.10%), Postives = 119/126 (94.44%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQ+A KAARK+AP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQIAAKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H33_PICST (Histone H3.3 OS=Pichia stipitis GN=HHT3 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.479e-57
Identity = 112/126 (88.89%), Postives = 119/126 (94.44%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQEA EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H33_DEBHA (Histone H3.3 OS=Debaryomyces hansenii GN=HHT3 PE=3 SV=3)

HSP 1 Score: 221.861 bits (564), Expect = 2.479e-57
Identity = 112/126 (88.89%), Postives = 119/126 (94.44%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQEA EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H3L_HUMAN (Histone H3-like OS=Homo sapiens PE=1 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 3.237e-57
Identity = 116/126 (92.06%), Postives = 119/126 (94.44%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDF TDLRFQS AV ALQEA+EAYLVGL EDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQ 125
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H3_AJECA (Histone H3 OS=Ajellomyces capsulata GN=HHT1 PE=3 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 4.228e-57
Identity = 111/126 (88.10%), Postives = 119/126 (94.44%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PG VALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGAVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126
[Close]
BLAST of CX288067 vs. ExPASy Swiss-Prot
Match: H33L2_CAEEL (Histone H3.3-like type 2 OS=Caenorhabditis elegans GN=his-74 PE=2 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 4.228e-57
Identity = 113/126 (89.68%), Postives = 119/126 (94.44%), Query Frame = 2 
Query:   23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 400
            MARTKQTARKSTGGKAPRK LATKAARKSA  TG VKK HR+RPGTVALREIR+YQKSTELL+RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+Q
Sbjct:    1 MARTKQTARKSTGGKAPRKALATKAARKSAIVTGSVKKVHRFRPGTVALREIRRYQKSTELLLRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQ 126
The following BLAST results are available for this feature:
BLAST of CX288067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_ASPCL1.113e-5788.89Histone H3 OS=Aspergillus clavatus GN=hht1 PE=3 SV... [more]
H33_CANAL1.113e-5788.89Histone H3.3 OS=Candida albicans GN=HHT3 PE=3 SV=3[more]
H31_TETTH1.898e-5788.10Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1... [more]
H31_TETPY1.898e-5788.10Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
H3_COCIM2.479e-5788.10Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV... [more]
H33_PICST2.479e-5788.89Histone H3.3 OS=Pichia stipitis GN=HHT3 PE=3 SV=1[more]
H33_DEBHA2.479e-5788.89Histone H3.3 OS=Debaryomyces hansenii GN=HHT3 PE=3... [more]
H3L_HUMAN3.237e-5792.06Histone H3-like OS=Homo sapiens PE=1 SV=3[more]
H3_AJECA4.228e-5788.10Histone H3 OS=Ajellomyces capsulata GN=HHT1 PE=3 S... [more]
H33L2_CAEEL4.228e-5789.68Histone H3.3-like type 2 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionC01016D09SK Veg1 Citrus clementina cDNA clone C01016D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288067 ID=CX288067; Name=CX288067; organism=Citrus clementina; type=EST; length=675bp
GAAGAGTTGAAGAAACTCAGAGATGGCCCGTACCAAGCAAACTGCACGTA
AGTCAACCGGAGGAAAGGCTCCTAGGAAGCAACTTGCTACCAAGGCCGCC
CGTAAGTCTGCGCCCACCACCGGTGGTGTTAAGAAGCCTCATCGTTACCG
TCCTGGAACCGTCGCCCTTCGAGAAATTCGCAAGTACCAGAAGAGTACCG
AGCTGCTTATCAGGAAACTCCCATTCCAGAGACTTGTTCGTGAAATTGCT
CAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCATGCAGTACTGGCCCT
GCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTTCGAGGACACTAACC
TCTGCGCCATTCATGCAAAGCGTGTCACTATTATGCCCAAGGACATACAG
CTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCGTAATTGCTGCTTGC
TTCAATTGAATGACTGGAAGGGAAGGGGGAAGTTGTAATGTGTTAATTTG
TACGTGGGGGTTGGTGGGGGTAGATAGGGGTAGGATTCCAGTNGTTATTA
GAATATGGCTTTTGTCATCATCTGGGTTTGTTTTTGGTGGTGTTTTATAA
TGTCTATTTGTTGATGATGGGGATTTTAATTCGCCATAAGAGACTGGCTT
TTATGTGTTCTTTTGGATACCTGTT
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