CX288107

Overview
NameCX288107
Unique NameCX288107
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: E4PD_ECOSE (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain SE11) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 233
            +VN   +KAA+G   GI+   ++PLVSVDF     S+ +D + T V G  ++K + W DNEWG++ R++D    +AT
Sbjct:  259 EVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
[Close]
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: E4PD_ECOLU (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 233
            +VN   +KAA+G   GI+   ++PLVSVDF     S+ +D + T V G  ++K + W DNEWG++ R++D    +AT
Sbjct:  259 EVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
[Close]
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: E4PD_ECOLI (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain K12) GN=epd PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 233
            +VN   +KAA+G   GI+   ++PLVSVDF     S+ +D + T V G  ++K + W DNEWG++ R++D    +AT
Sbjct:  259 EVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
[Close]
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: E4PD_ECOLC (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 233
            +VN   +KAA+G   GI+   ++PLVSVDF     S+ +D + T V G  ++K + W DNEWG++ R++D    +AT
Sbjct:  259 EVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
[Close]
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: E4PD_ECOL6 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O6 GN=epd PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 233
            +VN   +KAA+G   GI+   ++PLVSVDF     S+ +D + T V G  ++K + W DNEWG++ R++D    +AT
Sbjct:  259 EVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
[Close]
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: E4PD_ECOL5 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 233
            +VN   +KAA+G   GI+   ++PLVSVDF     S+ +D + T V G  ++K + W DNEWG++ R++D    +AT
Sbjct:  259 EVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
[Close]
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: E4PD_ECOHS (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 233
            +VN   +KAA+G   GI+   ++PLVSVDF     S+ +D + T V G  ++K + W DNEWG++ R++D    +AT
Sbjct:  259 EVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
[Close]
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: E4PD_ECODH (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 233
            +VN   +KAA+G   GI+   ++PLVSVDF     S+ +D + T V G  ++K + W DNEWG++ R++D    +AT
Sbjct:  259 EVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
[Close]
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: E4PD_ECOBW (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 233
            +VN   +KAA+G   GI+   ++PLVSVDF     S+ +D + T V G  ++K + W DNEWG++ R++D    +AT
Sbjct:  259 EVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
[Close]
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: E4PD_ECO8A (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 233
            +VN   +KAA+G   GI+   ++PLVSVDF     S+ +D + T V G  ++K + W DNEWG++ R++D    +AT
Sbjct:  259 EVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
The following BLAST results are available for this feature:
BLAST of CX288107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
E4PD_ECOSE4.153e-1140.26D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOLU4.153e-1140.26D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOLI4.153e-1140.26D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOLC4.153e-1140.26D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOL64.153e-1140.26D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOL54.153e-1140.26D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOHS4.153e-1140.26D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECODH4.153e-1140.26D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOBW4.153e-1140.26D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO8A4.153e-1140.26D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionC01016H01SK Veg1 Citrus clementina cDNA clone C01016H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288107 ID=CX288107; Name=CX288107; organism=Citrus clementina; type=EST; length=741bp
AAGATGTTAATGCAGCCTTCAGAAAGGCTGCTGAGGGGCCACTGAAGGGC
ATATTGGCCGTCTGCGATGTTCCACTGGTGTCGGTGGACTTCCGATGCTC
TGATGTTTCCTCCACCATTGACTCTTCATTGACCATGGTCATGGGTGATG
ATATGGTCAAGGTTGTTGCCTGGTACGACAATGAATGGGGATACAGCCAA
AGGGTTGTCGATTTGGCGCATTTGGTTGCAACCAAGTGGCCAGGCGTGGC
TGCAGGCGGAAGCGGAGACCCATTGGAGGATTTCTGCCAGACAAACCCTG
CTGATGAGGAGTGCAAAGTTTATGAAGCTTAAATTCTTTCTTAATTGGTT
GGCTAATTAATTACATAGGTTTTTCGCAGCCTTTGTCACAAAATGCTTTT
ATATTAATGACAACTGAGTGAGTTGAACAGACAATTTATCAAATTATATG
TCAAGCCGATGATCTTGCAGAATCAATTGGTCTTTGTTAGAGACACGTAA
CATTGAGAATGAGAAAACAGAACTACTGTATAAAAAAAAAAAAAAAAAAA
ACTCGCCTCGTGCCGAATTCGGCACGAGGCTTGTTCCAAGAATGACATTG
GATGAGCTCTTTGAAAAAAAGGCGAAGTTGCTAAGGCTGTTTTGGAGGAA
CTTGAGAAGGTGATGGGTGCATATGGATATAGCATTGAGCACATATTGAT
GGTAGACATTATACCTGATCCTGCTGTGCGCAAGGCATGAA
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