CX288107

Overview
NameCX288107
Unique NameCX288107
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 230
            ++  A ++A+EG L GIL   +  +VS D    + SS  D+   + +  + VK+V+WYDNEWGYS+RV+DL   +A
Sbjct:  256 EIKQAVKEASEGSLNGILGYTEDDIVSTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIA 331          
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 236
            ++  + +KAA GP+KGIL   +  +VS DF     SS  D+   + + D+ VK+++WYDNE+GYS RV DL   + +K
Sbjct:  257 NIKESVKKAAHGPMKGILGYTEDSVVSSDFVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVADLLMYMHSK 334          
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3PG_CRIFA (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Crithidia fasciculata GN=GAPDG PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTM---VMGDD-MVKVVAWYDNEWGYSQRVVDLAHLVATK 236
            +++AA +KA++  +KGIL   D  LVS DF     SS  DS  T+   + G+    KVV+WYDNEWGYS RVVDL   +  K
Sbjct:  273 EIDAALKKASQTYMKGILGFTDEELVSSDFINDARSSIYDSKATLQNNLPGEKRFFKVVSWYDNEWGYSHRVVDLVRFMGAK 354          
The following BLAST results are available for this feature:
BLAST of CX288107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
G3P_COCHE9.252e-1140.79Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3PT_DANRE9.252e-1141.03Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3PG_CRIFA9.252e-1146.34Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]

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Properties
Property NameValue
Genbank descriptionC01016H01SK Veg1 Citrus clementina cDNA clone C01016H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288107 ID=CX288107; Name=CX288107; organism=Citrus clementina; type=EST; length=741bp
AAGATGTTAATGCAGCCTTCAGAAAGGCTGCTGAGGGGCCACTGAAGGGC
ATATTGGCCGTCTGCGATGTTCCACTGGTGTCGGTGGACTTCCGATGCTC
TGATGTTTCCTCCACCATTGACTCTTCATTGACCATGGTCATGGGTGATG
ATATGGTCAAGGTTGTTGCCTGGTACGACAATGAATGGGGATACAGCCAA
AGGGTTGTCGATTTGGCGCATTTGGTTGCAACCAAGTGGCCAGGCGTGGC
TGCAGGCGGAAGCGGAGACCCATTGGAGGATTTCTGCCAGACAAACCCTG
CTGATGAGGAGTGCAAAGTTTATGAAGCTTAAATTCTTTCTTAATTGGTT
GGCTAATTAATTACATAGGTTTTTCGCAGCCTTTGTCACAAAATGCTTTT
ATATTAATGACAACTGAGTGAGTTGAACAGACAATTTATCAAATTATATG
TCAAGCCGATGATCTTGCAGAATCAATTGGTCTTTGTTAGAGACACGTAA
CATTGAGAATGAGAAAACAGAACTACTGTATAAAAAAAAAAAAAAAAAAA
ACTCGCCTCGTGCCGAATTCGGCACGAGGCTTGTTCCAAGAATGACATTG
GATGAGCTCTTTGAAAAAAAGGCGAAGTTGCTAAGGCTGTTTTGGAGGAA
CTTGAGAAGGTGATGGGTGCATATGGATATAGCATTGAGCACATATTGAT
GGTAGACATTATACCTGATCCTGCTGTGCGCAAGGCATGAA
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