CX288126

Overview
NameCX288126
Unique NameCX288126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRI_PROMM (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9313) GN=petC PE=3 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.583e-62
Identity = 107/176 (60.80%), Postives = 128/176 (72.73%), Query Frame = 1
Query:  160 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 687
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  +EN  V    WTETDFRTGE PWW
Sbjct:    2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRI_PROM3 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9303) GN=petC PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.583e-62
Identity = 107/176 (60.80%), Postives = 128/176 (72.73%), Query Frame = 1
Query:  160 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 687
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  +EN  V    WTETDFRTGE PWW
Sbjct:    2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPX (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH8102) GN=petC PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.112e-62
Identity = 108/177 (61.02%), Postives = 129/177 (72.88%), Query Frame = 1
Query:  160 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 690
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    AGGGTTAKD +GN I A  WL++H  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN  V    WTETDFRTG+ PWWA
Sbjct:    2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGAGGGTTAKDELGNAITATGWLSSHPEGDRSLVQGLKGDPTYLIVEGPDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTGDKPWWA 178          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRI_THEEB (Cytochrome b6-f complex iron-sulfur subunit OS=Thermosynechococcus elongatus (strain BP-1) GN=petC PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.033e-61
Identity = 105/170 (61.76%), Postives = 130/170 (76.47%), Query Frame = 1
Query:  181 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 687
            VPDMG+RQ MNLL  G ++      L P   +F PP  G  GGG  AKDA+GNDI  +++L  H PGDR+L +G+KGDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL  A + E+ K+VF PWTE DFRTG+ PWW
Sbjct:   10 VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRI_SYNEL (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus GN=petC PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.033e-61
Identity = 105/170 (61.76%), Postives = 130/170 (76.47%), Query Frame = 1
Query:  181 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 687
            VPDMG+RQ MNLL  G ++      L P   +F PP  G  GGG  AKDA+GNDI  +++L  H PGDR+L +G+KGDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL  A + E+ K+VF PWTE DFRTG+ PWW
Sbjct:   10 VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRI_PROMT (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL2A) GN=petC PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.757e-61
Identity = 105/176 (59.66%), Postives = 130/176 (73.86%), Query Frame = 1
Query:  160 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 687
            T +    VP MG+RQ MNLL  G V+      L P A +F P   G  GGGT AKD +GN++ A+ WL+TH  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY++ G+VVRGPAPLSLA+AH +IE+ +V+   WTETDFRTG  PWW
Sbjct:    2 TQMTTADVPSMGRRQFMNLLTFGTVTGVALGALYPVAQYFTPYRAGGGGGGTNAKDELGNNVSASGWLSTHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRI_PROM1 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL1A) GN=petC PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.757e-61
Identity = 105/176 (59.66%), Postives = 130/176 (73.86%), Query Frame = 1
Query:  160 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 687
            T +    VP MG+RQ MNLL  G V+      L P A +F P   G  GGGT AKD +GN++ A+ WL+TH  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY++ G+VVRGPAPLSLA+AH +IE+ +V+   WTETDFRTG  PWW
Sbjct:    2 TQMTTADVPSMGRRQFMNLLTFGTVTGVALGALYPVAQYFTPYRAGGGGGGTNAKDELGNNVSASGWLSTHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRI_PROM4 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9211) GN=petC PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.720e-60
Identity = 105/173 (60.69%), Postives = 127/173 (73.41%), Query Frame = 1
Query:  169 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 687
            P+D VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I A+ WL+ H  GDR+L +GLKGDPTYL+VE  + + ++GINA+CTHLGCVVPWNS  NK+ICPCHGSQY+  G+VVRGPAPLSLALAH ++E+ KV    W ETDFRTGE PWW
Sbjct:    6 PSD-VPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITASGWLSNHPAGDRSLVQGLKGDPTYLIVEGSEAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALAHIDVEDDKVFVSQWAETDFRTGEKPWW 177          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRI_PROMA (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus GN=petC PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.839e-59
Identity = 104/174 (59.77%), Postives = 126/174 (72.41%), Query Frame = 1
Query:  169 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 690
            P+D VP MG+RQ MNLL  G  +      L P A FF P   G   GGTTAKD +GN + A  WL+ H  GDR+L +GLKGDPTYL+V+ D  + ++GINA+CTHLGCVVPWNS  NK+ICPCHGSQY+  G+VVRGPAPLSLAL H +I++  V+   WTETDFRTG+ PWWA
Sbjct:    6 PSD-VPSMGRRQFMNLLTFGTATGVALGALYPVANFFMPLRAGGGTGGTTAKDELGNAVTATGWLSNHPAGDRSLVQGLKGDPTYLIVDGDAAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALTHIDIDDDNVLVSQWTETDFRTGDKPWWA 178          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRI_PROMS (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain AS9601) GN=petC PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.403e-58
Identity = 102/177 (57.63%), Postives = 125/177 (70.62%), Query Frame = 1
Query:  160 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 690
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
The following BLAST results are available for this feature:
BLAST of CX288126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_PROMM3.583e-6260.80Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM33.583e-6260.80Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_SYNPX6.112e-6261.02Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_THEEB3.033e-6161.76Cytochrome b6-f complex iron-sulfur subunit OS=The... [more]
UCRI_SYNEL3.033e-6161.76Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMT6.757e-6159.66Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM16.757e-6159.66Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM45.720e-6060.69Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMA2.839e-5959.77Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMS2.403e-5857.63Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]

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Properties
Property NameValue
Genbank descriptionC01017A09SK Veg1 Citrus clementina cDNA clone C01017A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288126 ID=CX288126; Name=CX288126; organism=Citrus clementina; type=EST; length=696bp
AATTCGGCACGTGGCTCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATG
CTCAAGCAAGAGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAAC
CAGCAAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAG
TGCCAGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAG
GCAGCTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGAT
TTATGTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGT
GCTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGC
CGCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAG
GATTGAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTT
GCATCATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCC
ATGGAATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAAT
ACAATAACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCA
TTGGCTCATGCCAACATTGAAAATGGTAAGGTAGTCTTCGTTCCATGGAC
GGAAACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACT
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