CX288126

Overview
NameCX288126
Unique NameCX288126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRIC_ANASP (Cytochrome b6-f complex iron-sulfur subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=petC3 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.339e-37
Identity = 79/176 (44.89%), Postives = 102/176 (57.95%), Query Frame = 1
Query:  163 SIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFF-APPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 687
            SIP +  P + +RQL+N +    V++  G  L P   F  AP     AGG   AKD +G  I A+  L    P  R L  GL G+PTYL+V++D TL   G+   CTHLGC  PWN  + +F CPCHGS+Y   G VVRGPAPL L +    + +  ++  PWTETD RTG+ PWW
Sbjct:    4 SIPIES-PSLSRRQLLNFITGATVAVTAGAALYPAGKFLIAPAEKTGAGGAILAKDILGKQIPASQIL-AEPPQTRALVAGLAGEPTYLIVKEDHTLDRIGLVDNCTHLGCTFPWNPLDQQFQCPCHGSRYAPDGSVVRGPAPLPLKIVQVAVIDNSILISPWTETDPRTGKKPWW 177          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRIB_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC2 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.826e-36
Identity = 77/169 (45.56%), Postives = 94/169 (55.62%), Query Frame = 1
Query:  184 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 687
            P M +RQL+N      V+      + P   FF PP   + A GG  AKD IG+ I A+  L     G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ QG V RGPA   L L H  +++  +    W ETD RTGE PWW
Sbjct:   10 PSMSRRQLLNFFTGAIVAATASAAIYPATKFFMPPAESTDAEGGVLAKDKIGHPIPASQIL-VQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVHVQVKDDYIWISSWQETDPRTGEKPWW 177          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRIB_ANASP (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena sp. (strain PCC 7120) GN=petC2 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.734e-35
Identity = 76/169 (44.97%), Postives = 94/169 (55.62%), Query Frame = 1
Query:  184 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 687
            P M +RQL+N      V+      + P   FF PP   + A GG  A+D IG+ I A+  L     G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ QG V RGPA   L L    +++  +   PW ETD RTGE PWW
Sbjct:   10 PSMSRRQLLNFFTGAIVATTASAAIYPATKFFMPPAESTDAEGGILAQDKIGHPIPASQIL-AQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVQVQVKDDYIWISPWQETDPRTGEKPWW 177          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRI_CHLTE (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium tepidum GN=petC PE=3 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  412 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVV 636
            D   +VV    +L +  ++A+CTHLGC+V W+ A +   CPCHG++Y   G+++ GP PL L      IE+GK+V
Sbjct:  105 DDKVIVVNHGGSLTA--VSAICTHLGCLVHWDEAADMIACPCHGAKYTQDGKIISGPQPLPLKQYKVKIEDGKIV 177          
BLAST of CX288126 vs. ExPASy Swiss-Prot
Match: UCRI_CHLLT (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium limicola f.sp. thiosulfatophilum GN=petC PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  424 LVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVV 636
            +VV K   L +  ++AVCTHLGC+V W  A+N++ CPCHG++Y   G ++ GP PL L    A IE   ++
Sbjct:  109 IVVNKGGALTA--VSAVCTHLGCLVNWVDADNQYFCPCHGAKYKLTGEIISGPQPLPLKQYKARIEGDSII 177          
The following BLAST results are available for this feature:
BLAST of CX288126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIC_ANASP2.339e-3744.89Cytochrome b6-f complex iron-sulfur subunit 3 OS=A... [more]
UCRIB_ANAVT9.826e-3645.56Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRIB_ANASP3.734e-3544.97Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRI_CHLTE8.949e-1341.33Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]
UCRI_CHLLT1.994e-1243.66Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]

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Properties
Property NameValue
Genbank descriptionC01017A09SK Veg1 Citrus clementina cDNA clone C01017A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288126 ID=CX288126; Name=CX288126; organism=Citrus clementina; type=EST; length=696bp
AATTCGGCACGTGGCTCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATG
CTCAAGCAAGAGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAAC
CAGCAAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAG
TGCCAGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAG
GCAGCTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGAT
TTATGTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGT
GCTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGC
CGCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAG
GATTGAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTT
GCATCATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCC
ATGGAATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAAT
ACAATAACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCA
TTGGCTCATGCCAACATTGAAAATGGTAAGGTAGTCTTCGTTCCATGGAC
GGAAACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACT
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