CX288162

Overview
NameCX288162
Unique NameCX288162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.349e-43
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            KGIP++ T+D RTIRYPDPLIK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.375e-43
Identity = 82/122 (67.21%), Postives = 99/122 (81.15%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            KGIPY+ T+DGRTIRYPDPLIK NDT+K+DL   KIT F+KF+ GNIVM TGGRN GRVG I +RE+H+G F+ +HI+DAL ++F TRL NVF IG+G+K  +SLPKGKGIKLSI EE   R
Sbjct:  134 KGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLISLPKGKGIKLSIAEERDAR 255          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.375e-43
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            KG+P++ T+D RTIRYPDPLIK NDT+K+DL   KI D+IKFD GN+ MVTGG N GRVG+I +RE+H GSF+ +H++D+ GH FATRL  +F IGK +KP++SLP+GKGIKLS+ EE  +R
Sbjct:  134 KGVPFLTTHDARTIRYPDPLIKVNDTVKVDLATGKIDDYIKFDSGNVCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATRLNYIFVIGKSTKPYISLPRGKGIKLSVAEERDRR 255          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 7.462e-43
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++ EE  KR
Sbjct:  134 KGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.745e-43
Identity = 79/122 (64.75%), Postives = 100/122 (81.97%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            KG+P++ T+DGRT+RYPDP+IK NDTI+L++  NKI D IKFD GN+ M+TGGRN GRVG + +RE+H GSF+  HI+D+ GH FATR+ NVF IGKGSK +VSLP+GKG+KLSI EE  KR
Sbjct:  134 KGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRNLGRVGTVVSRERHPGSFDICHIKDSQGHTFATRMNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.745e-43
Identity = 79/122 (64.75%), Postives = 100/122 (81.97%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            K +PY+ T+DGRTIRYPDPLIK ND+I+LD+   KI DFIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKG+K ++SLP+GKGI+L+I EE  KR
Sbjct:  134 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKR 255          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 9.745e-43
Identity = 76/122 (62.30%), Postives = 98/122 (80.33%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            KGIP++ T+D RTIRYPDPLIK NDT+++DL   KIT FIKFD GN+ MV GG N GRVG++ NRE+H GS + +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.273e-42
Identity = 83/123 (67.48%), Postives = 99/123 (80.49%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLPKGKGIKLSIIEEARKR 367
            KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL   KI  FIKFD G +VMVTGGRN GRVG+I +REK +G F+ +HI+DAL + F TRL NVF IG +  KPWVSLPKGKGIKLSI EE  +R
Sbjct:  134 KGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSISEERDRR 256          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.273e-42
Identity = 75/122 (61.48%), Postives = 99/122 (81.15%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L++ EE  KR
Sbjct:  134 KGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 3.703e-42
Identity = 78/122 (63.93%), Postives = 97/122 (79.51%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            KG+PY+ T+DGRTIRYPDP IK NDT+K+DL   KITDFIKFD G +V VTGGRN GR+G I ++E+H G F+ +HI+D+L + F TRL NVF IG+  KP++SLPKGKGIKLSI EE  +R
Sbjct:  134 KGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRR 255          
The following BLAST results are available for this feature:
BLAST of CX288162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RS4Y1_PONPY3.349e-4363.1140S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4_YARLI4.375e-4367.2140S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_IXOSC4.375e-4362.3040S ribosomal protein S4 OS=Ixodes scapularis GN=R... [more]
RS4Y1_HUMAN7.462e-4362.3040S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4_LYSTE9.745e-4364.7540S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4_BOMMO9.745e-4364.7540S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4Y2_PANTR9.745e-4362.3040S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4_CANAL1.273e-4267.4840S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4Y1_GORGO1.273e-4261.4840S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4_YEAST3.703e-4263.9340S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC01017D09SK Veg1 Citrus clementina cDNA clone C01017D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288162 ID=CX288162; Name=CX288162; organism=Citrus clementina; type=EST; length=663bp
GAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACC
CTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGAG
AACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGT
CACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAAGAACAGGGAAA
AGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGTCAT
GAGTTTGCAACTCGCCTAGGCAATGTGTTCACCATCGGGAAGGGTTCAAA
ACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAAGTTGTCCATCATTG
AGGAAGCTAGGAAGAGACAGGCTGCCCAGGCTGCTGCTTAAGCTTTTACA
ATGAATTTGGATACATTTTGCTGCTTTGTTTTTTCTTGTTGAATTAGAGC
TGATTGGCACTCTCTAAAGCTGAAGTAGGACCGATGCAAAAATGAATCTT
TATTTTTATTTTTATTTTTATCAGCACAATTTTGAACCTGCTTTGTCCTT
TTTTATTTTAGCTACTATTTGGTGGATGTTATTTTCAACTATTTAATCTA
AGTTCATGTATCTCTTTACCTCGTGCCGAATTCGGCACGAGGATTCAATT
TGTCTACTACAAC
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