CX288162

Overview
NameCX288162
Unique NameCX288162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.703e-42
Identity = 76/122 (62.30%), Postives = 101/122 (82.79%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            K +P++ T+DGRTIRYPDPLIK ND+++LD+  +KI DFIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKG+K ++SLP+GKG++L+I EE  KR
Sbjct:  134 KNVPFLVTHDGRTIRYPDPLIKVNDSVQLDIATSKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGVRLTIAEERDKR 255          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 3.703e-42
Identity = 76/122 (62.30%), Postives = 97/122 (79.51%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            KGIP++ T+D RTIRYPDPLIK NDT+++DL   KIT FIKFD GN+ MV  G N GRVG+I NRE+H GS + +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 3.703e-42
Identity = 75/122 (61.48%), Postives = 98/122 (80.33%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++  E  KR
Sbjct:  134 KGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 255          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 3.703e-42
Identity = 75/122 (61.48%), Postives = 98/122 (80.33%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++  E  KR
Sbjct:  134 KGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 255          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 9.439e-38
Identity = 70/118 (59.32%), Postives = 91/118 (77.12%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEE 355
            +GIPY++T DGRTIRYPDP I  +DTIK+D+E  KIT FI F+V N+ M+ GG N GRVG + +REKH GSF+ +H+ D  GH+FATRL NVF IGK S+ +VSLP GKG++ S ++E
Sbjct:  134 QGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRVDE 251          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.991e-37
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            KG+P + T DGRTIRYPDP +K NDTI  ++   KITD +KF+ GN+  VTGGRN GRVGII +RE+  G+ + IHI+D+ GH FATR+ NVF IGKG+K  VSLP G GI+LSI EE  KR
Sbjct:  133 KGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKR 254          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.320e-31
Identity = 61/120 (50.83%), Postives = 88/120 (73.33%), Query Frame = 2
Query:    8 IPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 367
            IPYI T+D RTIR+P+P IK  DT+K DL  NKI +F   + GN+  +  G N GRVGII++ EKH+GSF+  H++DA G+ FATRLGN+F +G+G K ++ LP G G++ +I+EE +++
Sbjct:  137 IPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKLYIELPSGDGVRETILEERKRK 256          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.366e-28
Identity = 55/80 (68.75%), Postives = 68/80 (85.00%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA 241
            KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA
Sbjct:  115 KGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 2
Query:    2 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKP-WVSLPKGKGIKLSIIEE 355
            +GIPYI +  G +IR+ DP I    TIK+  E +K+ ++I      ++ V+ G+ RGRVG+I N    +G      + D  G+ F+    +   IG+ S+  W++LPK +GI+ S +E+
Sbjct:  133 QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI-NTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENIWITLPKERGIRQSELEK 250          
BLAST of CX288162 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 2
Query:   17 INTYDGRTI--RYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 325
            +N +DGR I  R  DP      + +  DT+ + +   +I   IKF  G I ++ GGRN GRVG++K+ +K  G   T + ++DA G+ F T L  VF IG   +P +SLP+G
Sbjct:  140 LNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVISLPEG 250          
The following BLAST results are available for this feature:
BLAST of CX288162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RS4_SPOFR3.703e-4262.3040S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]
RS4Y2_HUMAN3.703e-4262.3040S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4Y1_PANTR3.703e-4261.4840S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA3.703e-4261.4840S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4_DICDI9.439e-3859.3240S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_CAEEL7.991e-3760.6640S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH1.320e-3150.8340S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_HORSE1.366e-2868.7540S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_ENCCU1.982e-1134.4540S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_AERPE7.531e-1138.3930S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC01017D09SK Veg1 Citrus clementina cDNA clone C01017D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288162 ID=CX288162; Name=CX288162; organism=Citrus clementina; type=EST; length=663bp
GAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACC
CTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGAG
AACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGT
CACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAAGAACAGGGAAA
AGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGTCAT
GAGTTTGCAACTCGCCTAGGCAATGTGTTCACCATCGGGAAGGGTTCAAA
ACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAAGTTGTCCATCATTG
AGGAAGCTAGGAAGAGACAGGCTGCCCAGGCTGCTGCTTAAGCTTTTACA
ATGAATTTGGATACATTTTGCTGCTTTGTTTTTTCTTGTTGAATTAGAGC
TGATTGGCACTCTCTAAAGCTGAAGTAGGACCGATGCAAAAATGAATCTT
TATTTTTATTTTTATTTTTATCAGCACAATTTTGAACCTGCTTTGTCCTT
TTTTATTTTAGCTACTATTTGGTGGATGTTATTTTCAACTATTTAATCTA
AGTTCATGTATCTCTTTACCTCGTGCCGAATTCGGCACGAGGATTCAATT
TGTCTACTACAAC
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