CX288186

Overview
NameCX288186
Unique NameCX288186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.874e-47
Identity = 90/131 (68.70%), Postives = 111/131 (84.73%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENM 401
            G G+YL+E+NPNIK+ G+EP+ES IL+GGKPGPHKIQGIGAGF+P  LD  ++DE I+VSSDE++E+AK LAL+EGLLVGISSG      ++V +RPENAGKL  VVFPSFGERYLSSVLF SI++E E+M
Sbjct:  192 GTGKYLQEQNPNIKLYGVEPTESAILNGGKPGPHKIQGIGAGFIPGVLDVDIIDETIQVSSDESIEMAKSLALKEGLLVGISSGAAAAAAIKVAQRPENAGKLFVVVFPSFGERYLSSVLFHSIKKEAESM 322          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 4.874e-47
Identity = 91/131 (69.47%), Postives = 110/131 (83.97%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENM 401
            GAGRYL+E+NP+IK+ G+EP ES +LSGGKPGPHKIQGIGAGFVP  LD  +++E ++VSSDEA+E+AK LAL+EGLLVGISSG      + + +RPEN GKL  VVFPSFGERYLSSVLFQSI++E ENM
Sbjct:  188 GAGRYLREQNPDIKIYGVEPVESAVLSGGKPGPHKIQGIGAGFVPGVLDVDLINETVQVSSDEAIEMAKALALKEGLLVGISSGAAAAAAVRLAQRPENEGKLFVVVFPSFGERYLSSVLFQSIKKEAENM 318          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.048e-45
Identity = 86/131 (65.65%), Postives = 110/131 (83.97%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENM 401
            GAG+YLKE+NPN+K+ G+EP ES ILSGGKPGPHKIQGIGAGF+P  L+  ++DEV++VSSDE++++A+ LAL+EGLLVGISSG      +++ KRPENAGKL   VFPSFGERYLS+VLF + R+E E+M
Sbjct:  188 GAGKYLKEQNPNVKLYGVEPIESAILSGGKPGPHKIQGIGAGFIPSVLEVDLIDEVVQVSSDESIDMARLLALKEGLLVGISSGAAAAAAIKLAKRPENAGKLFVAVFPSFGERYLSTVLFDATRKEAESM 318          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.493e-45
Identity = 85/131 (64.89%), Postives = 109/131 (83.21%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENM 401
            GAG+YLKE+NPN+K+ G+EP ES ILSGGKPGPHKIQGIGAGF+P  L+  ++DEV++VSSDE++++A+ LA +EGLLVGISSG      +++ KRPENAGKL   VFPSFGERYLS+VLF + R+E E+M
Sbjct:  190 GAGKYLKEQNPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPNVLETNLIDEVVQVSSDESIDMARLLAREEGLLVGISSGAAAAAAIKLAKRPENAGKLFVAVFPSFGERYLSTVLFDATRKEAESM 320          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 2.957e-44
Identity = 84/131 (64.12%), Postives = 109/131 (83.21%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENM 401
            GAG+YLKE+N N+K+ G+EP ES ILSGGKPGPHKIQGIGAGF+P  L+  ++DEV++VSSDE++++A+QLAL+EGLLVGISSG      +++ +RPENAGKL   +FPSFGERYLS+VLF + R+E E M
Sbjct:  188 GAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAM 318          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_MYCTU (Cysteine synthase A OS=Mycobacterium tuberculosis GN=cysK PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.071e-34
Identity = 66/126 (52.38%), Postives = 94/126 (74.60%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIRE 386
            G  + +KE+ P+ + + +EP+ S +LSGG+ GPH IQGIGAGFVP  LD+ ++DE+I V +++A+ +A++LA +EGLLVGISSG      ++V +RPENAGKLI VV P FGERYLS+ LF  + +
Sbjct:  185 GVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADVAD 310          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_MYCBO (Cysteine synthase A OS=Mycobacterium bovis GN=cysK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.071e-34
Identity = 66/126 (52.38%), Postives = 94/126 (74.60%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIRE 386
            G  + +KE+ P+ + + +EP+ S +LSGG+ GPH IQGIGAGFVP  LD+ ++DE+I V +++A+ +A++LA +EGLLVGISSG      ++V +RPENAGKLI VV P FGERYLS+ LF  + +
Sbjct:  185 GVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADVAD 310          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_SYNY3 (Cysteine synthase OS=Synechocystis sp. (strain PCC 6803) GN=cysK PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33
Identity = 67/124 (54.03%), Postives = 88/124 (70.97%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSI 380
            G    LKEK P+ + I +EP  S +LSGGKPGPHKIQGIGAGF+P  LD  ++DEVI V+ +EA+   ++LA +EG+L GIS+G      ++V KRP N  KLI ++ PSFGERYLS+ LFQ +
Sbjct:  188 GVASVLKEKKPSFQAIAVEPQNSPVLSGGKPGPHKIQGIGAGFIPEVLDVNLIDEVIAVTDEEAIAYGRRLAREEGILSGISTGAALAAAIKVAKRPANKDKLIVMIQPSFGERYLSTPLFQDL 311          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_MYCLE (Cysteine synthase A OS=Mycobacterium leprae GN=cysK PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.866e-32
Identity = 64/124 (51.61%), Postives = 90/124 (72.58%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSI 380
            G  R +KE+ P  + + +EP+ S +LSGG+ GPH IQGIGAGFVP  L   ++DE++ V ++EA+++A++LA +EGLLVGIS+G      + V +RPEN GKLI VV P FGERYLS++LF  +
Sbjct:  185 GVARIIKERRPATQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPSVLVLDLVDEIVTVGNEEALDLARRLAKEEGLLVGISAGAAVCAALHVARRPENTGKLIVVVLPDFGERYLSTMLFADL 308          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_NEIMB (Cysteine synthase OS=Neisseria meningitidis serogroup B GN=cysK PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 62/124 (50.00%), Postives = 87/124 (70.16%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSI 380
            G G  LK+  P +KV+ +EP  S +LSGG+ GPH IQGIGAGF+P  L+  + D + +VS++ A E A+ +A +EG+LVGISSG      +++ K+PEN GKLI V+ PS+GERYLS+ LF  +
Sbjct:  186 GVGEVLKKYKPEVKVVAVEPEASPVLSGGEKGPHPIQGIGAGFIPTVLNTKIYDSITKVSNEAAFETARAIAEKEGILVGISSGAAVWSALQLAKQPENEGKLIVVLLPSYGERYLSTPLFADL 309          
The following BLAST results are available for this feature:
BLAST of CX288186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CYSK_WHEAT4.874e-4768.70Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSK1_ORYSJ4.874e-4769.47Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK1_BRAJU2.048e-4565.65Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK2_BRAJU3.493e-4564.89Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK1_ARATH2.957e-4464.12Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK_MYCTU8.071e-3452.38Cysteine synthase A OS=Mycobacterium tuberculosis ... [more]
CYSK_MYCBO8.071e-3452.38Cysteine synthase A OS=Mycobacterium bovis GN=cysK... [more]
CYSK_SYNY36.832e-3354.03Cysteine synthase OS=Synechocystis sp. (strain PCC... [more]
CYSK_MYCLE9.866e-3251.61Cysteine synthase A OS=Mycobacterium leprae GN=cys... [more]
CYSK_NEIMB1.861e-3050.00Cysteine synthase OS=Neisseria meningitidis serogr... [more]

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Properties
Property NameValue
Genbank descriptionC01017F09SK Veg1 Citrus clementina cDNA clone C01017F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288186 ID=CX288186; Name=CX288186; organism=Citrus clementina; type=EST; length=652bp
CGGCACGAGGAGCTGGTCGATATCTTAAAGAGAAAAACCCTAATATCAAG
GTTATTGGCATAGAGCCTTCCGAAAGCAATATACTTTCAGGTGGAAAGCC
TGGTCCGCACAAGATTCAAGGGATTGGAGCAGGTTTTGTTCCCAGGAATT
TGGATGAGGGTGTGCTTGATGAAGTCATTGAGGTATCTAGTGATGAAGCT
GTTGAAATTGCAAAGCAGTTAGCACTCCAGGAAGGCTTGCTGGTTGGCAT
ATCTTCTGGGGCGGCAGCTGCTGCAGCAATGGAGGTTGGGAAGAGACCTG
AGAATGCTGGAAAGCTTATTGCAGTTGTGTTTCCGAGCTTTGGAGAACGA
TATCTCTCATCCGTTCTTTTCCAGTCAATCCGCGAAGAATGTGAGAACAT
GCAGCCTGTGCCGTGAAATTCAACTCTTCGAGATTTATTGAAAATGCAAA
GCTTATTTTTCTGTCTTTCATAGACATTGTCATACATTTTGCTTTTGTTT
TAGTCAATATTTTCTGTTTTTGTGTACATCCACTAGTAGGATCCTAATTA
TAGTTATGTCCATTCATGACTGTTAAGTCCTTTTTTAAGAAGGAAAATCC
TGTTATTTGTGGAATTCATCTTAGGGGTGGAATTTGTGATTACATTTCTC
CT
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